Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4430
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0005 - 4065845-4065970,4067856-4067913,4067982-4068040           28   4.6  
06_02_0001 - 10431189-10432634                                         28   4.6  
08_02_0715 - 20352613-20352852,20352926-20352982,20354208-203543...    28   6.1  
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713...    28   6.1  
05_06_0151 - 25999366-26000044,26004820-26005637                       28   6.1  
01_06_1050 + 34125087-34126001,34126082-34126639                       28   6.1  

>10_02_0005 - 4065845-4065970,4067856-4067913,4067982-4068040
          Length = 80

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 144 YQHSSTYFCREAVMRFGFEWCDSRETK 224
           YQH S   C +A  RFGF   D  ++K
Sbjct: 13  YQHDSQESCTQAAARFGFLPLDQMQSK 39


>06_02_0001 - 10431189-10432634
          Length = 481

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 43  GFVEDGDRYLWYLKAPLMDRED 108
           G    G R+LW LK  ++DR+D
Sbjct: 309 GLEASGSRFLWILKTTVVDRDD 330


>08_02_0715 -
           20352613-20352852,20352926-20352982,20354208-20354339,
           20354754-20354828,20355779-20355943,20356031-20356263,
           20356484-20356574,20356789-20357223,20357911-20357976,
           20358688-20358807,20358915-20359121
          Length = 606

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +3

Query: 318 AGR*FMITISCKKSPLVYLIEKYMARSVDFGLLGWQTTPPCLFRW 452
           AG   ++ +SC K P + +I      + ++G+ G   +P  LF W
Sbjct: 452 AGAKMVMAVSCSKVPKITIIVGGSFGAGNYGMCGRAYSPNFLFMW 496


>08_02_0660 -
           19768165-19769394,19770500-19770752,19771307-19771372,
           19771524-19771588,19773265-19773343,19773920-19774293
          Length = 688

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = +3

Query: 90  VNGSGGSVMTCFERRRGRYQHSSTYFCREAVMRFGFEWC 206
           ++G GGSV  CF+ RR R             +  G  WC
Sbjct: 158 MHGRGGSVEVCFQGRRMRAASDRGLDALPIDLEVGVPWC 196


>05_06_0151 - 25999366-26000044,26004820-26005637
          Length = 498

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 43  GFVEDGDRYLWYLKAPLMDREDP 111
           G  + G R+LW ++AP++   DP
Sbjct: 315 GLEKSGHRFLWVVRAPIVVNNDP 337


>01_06_1050 + 34125087-34126001,34126082-34126639
          Length = 490

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   WVNSLVEPFVASDGFVEDGDRYLWYLKA 87
           +V S++E F+    F  DGD++LW  KA
Sbjct: 113 YVVSVMEDFLGHGIFNSDGDQWLWQRKA 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,445
Number of Sequences: 37544
Number of extensions: 269259
Number of successful extensions: 599
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)