Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4430
         (576 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p pro...    29   4.5  
AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein...    29   4.5  
AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein...    29   4.5  
AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA...    29   4.5  

>AY052030-1|AAK93454.1| 1422|Drosophila melanogaster LD47893p protein.
          Length = 1422

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 206  TPFKTE--THYRFTAEIGRGVLVPTS--TSLKTRHYGSSRSINGAFRYH 72
            TPF T    H   T   G  V  P+S  +S +  HYGSS       RYH
Sbjct: 1230 TPFMTPYTPHASQTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYH 1278


>AF104401-1|AAF14115.1| 1827|Drosophila melanogaster SPT6 protein
            protein.
          Length = 1827

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 206  TPFKTE--THYRFTAEIGRGVLVPTS--TSLKTRHYGSSRSINGAFRYH 72
            TPF T    H   T   G  V  P+S  +S +  HYGSS       RYH
Sbjct: 1635 TPFMTPYTPHASQTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYH 1683


>AF104400-1|AAF14114.1| 1831|Drosophila melanogaster SPT6 protein
            protein.
          Length = 1831

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 206  TPFKTE--THYRFTAEIGRGVLVPTS--TSLKTRHYGSSRSINGAFRYH 72
            TPF T    H   T   G  V  P+S  +S +  HYGSS       RYH
Sbjct: 1639 TPFMTPYTPHASQTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYH 1687


>AE014298-861|AAF46140.1| 1831|Drosophila melanogaster CG12225-PA
            protein.
          Length = 1831

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
 Frame = -2

Query: 206  TPFKTE--THYRFTAEIGRGVLVPTS--TSLKTRHYGSSRSINGAFRYH 72
            TPF T    H   T   G  V  P+S  +S +  HYGSS       RYH
Sbjct: 1639 TPFMTPYTPHASQTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYH 1687


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,449,033
Number of Sequences: 53049
Number of extensions: 466543
Number of successful extensions: 874
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2276053890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)