Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4430
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038622-2|AAL06047.2|  177|Caenorhabditis elegans Hypothetical ...    31   0.44 
U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical pr...    27   9.5  
U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    27   9.5  

>AF038622-2|AAL06047.2|  177|Caenorhabditis elegans Hypothetical
           protein R07C12.2 protein.
          Length = 177

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -2

Query: 233 IQFFSFTTVTP--FKTETHYRFTAEIGRGVLVPTSTSLKTRHYGSSRSINGAFRYHKYRS 60
           + F +  TV P  F+TE++  F   +     + T  S     Y +S S NG+F   +  S
Sbjct: 60  VVFGNGATVLPPLFQTESYSYFAVALQSHGPIDTFQSFNLSWYNASSSTNGSF--SRNNS 117

Query: 59  PSSTNPSLATKGST 18
           PS  N ++   G+T
Sbjct: 118 PSEGNSTIRIGGAT 131


>U58753-8|AAC24439.1|  633|Caenorhabditis elegans Hypothetical
           protein W03B1.9 protein.
          Length = 633

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 190 KRITASRQK*VEECWYLPRRRSKHVITDPPDPLTVLLGTTST 65
           +R T S    +++   +P RRS  ++T+PP P+    G   T
Sbjct: 475 RRRTRSAPPAIQDVPAVPVRRSDSMLTNPPSPVGTRTGAVFT 516


>U58753-7|AAC24433.1|  581|Caenorhabditis elegans Hypothetical
           protein W03B1.5 protein.
          Length = 581

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 190 KRITASRQK*VEECWYLPRRRSKHVITDPPDPLTVLLGTTST 65
           +R T S    +++   +P RRS  ++T+PP P+    G   T
Sbjct: 423 RRRTRSAPPAIQDVPAVPVRRSDSMLTNPPSPVGTRTGAVFT 464


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = -2

Query: 221 SFTTVTPFKTETHYRFTAEIGRGVLVPTSTSLKTRHYGSSRSINGAFRYHKYRSPSSTNP 42
           S  + T   T +  + T  +G    +PT+    T H GSS +  G     +    SS   
Sbjct: 497 SIESPTASVTVSSPKSTEPLGTSSAIPTAPDHSTVHDGSSSTTKGLIYPLEPDESSSGTM 556

Query: 41  SLATKGSTSEL 9
            + T  ST++L
Sbjct: 557 DMTTPTSTTDL 567


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,071,032
Number of Sequences: 27780
Number of extensions: 240862
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)