Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4429
(470 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical pr... 173 7e-44
Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical p... 161 3e-40
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 29 1.3
AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear recep... 29 1.3
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 29 1.3
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 29 1.3
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 29 1.3
Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical pr... 29 2.2
U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical pr... 28 3.9
Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical pr... 27 9.0
Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical pr... 27 9.0
U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical pr... 27 9.0
AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical... 27 9.0
AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical ... 27 9.0
>Z49967-1|CAA90247.1| 161|Caenorhabditis elegans Hypothetical
protein F54C9.1 protein.
Length = 161
Score = 173 bits (420), Expect = 7e-44
Identities = 82/113 (72%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 313
+D HF TGDSGA+ATFP QCSALRKN VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7 DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66
Query: 314 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLK 469
IF KK EDICPSTHNMDVP VKR +Y L I DDGY +LM ++ + ++DLK
Sbjct: 67 IFTSKKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLK 118
>Z27079-13|CAA81597.2| 195|Caenorhabditis elegans Hypothetical
protein T05G5.10 protein.
Length = 195
Score = 161 bits (390), Expect = 3e-40
Identities = 75/113 (66%), Positives = 93/113 (82%), Gaps = 1/113 (0%)
Frame = +2
Query: 134 EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 313
++ F++ +SGA+ATFP QCSALRKN VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41 DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100
Query: 314 IFNGKKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLK 469
IF KK EDICPSTHNMDVP VKR +Y L I +DG+ +LM ++ +L++DLK
Sbjct: 101 IFTTKKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLK 152
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 132 SKTHTSRPETPGPQPPSPCNVRPCVKTV 215
S + T+ TPGP P +PC+ P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF332209-1|AAK17980.1| 350|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 350
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 132 SKTHTSRPETPGPQPPSPCNVRPCVKTV 215
S + T+ TPGP P +PC+ P V T+
Sbjct: 29 SASTTTNYSTPGPSPMAPCSAGPDVLTL 56
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 132 SKTHTSRPETPGPQPPSPCNVRPCVKTV 215
S + T+ TPGP P +PC+ P V T+
Sbjct: 183 SASTTTNYSTPGPSPMAPCSAGPDVLTL 210
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 132 SKTHTSRPETPGPQPPSPCNVRPCVKTV 215
S + T+ TPGP P +PC+ P V T+
Sbjct: 165 SASTTTNYSTPGPSPMAPCSAGPDVLTL 192
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = +3
Query: 129 TSKTHTSRPETPGPQPPSPCNVRP 200
T K T R E+P P PP P RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381
>Z74031-2|CAA98454.2| 568|Caenorhabditis elegans Hypothetical
protein F32D8.2 protein.
Length = 568
Score = 28.7 bits (61), Expect = 2.2
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 7/59 (11%)
Frame = +2
Query: 314 IFNGKKYEDICPSTHNMDVPHVKREDYQLT------DISDDGYLTLMADN-GDLREDLK 469
IF + ED+ T + H+ R + ++ D+S DGYLTL + N DL D++
Sbjct: 74 IFFPNEDEDVFGLTPDKSKQHIVRGECKINELNEKVDLSSDGYLTLRSKNTNDLPSDIR 132
>U40958-5|AAA81764.1| 654|Caenorhabditis elegans Hypothetical
protein F09F9.4 protein.
Length = 654
Score = 27.9 bits (59), Expect = 3.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 216 KPFLRRAEHCMGKVAEAPESPVSKCVSSMSP 124
+P +R+++C G + E E ++KC +M P
Sbjct: 345 EPVPKRSKYCDGPLIETQECTLTKCPEAMMP 375
>Z99276-1|CAB16481.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 264 PKPESTATLKFTWLGLISSMVKSMKISVPPHTTWT 368
P P+S + +G + M S+ + VPP+T WT
Sbjct: 587 PPPQSMTPVGGP-MGPMGPMTPSIPVQVPPNTMWT 620
>Z73428-6|CAA97810.2| 1014|Caenorhabditis elegans Hypothetical
protein M142.6 protein.
Length = 1014
Score = 26.6 bits (56), Expect = 9.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 264 PKPESTATLKFTWLGLISSMVKSMKISVPPHTTWT 368
P P+S + +G + M S+ + VPP+T WT
Sbjct: 587 PPPQSMTPVGGP-MGPMGPMTPSIPVQVPPNTMWT 620
>U39849-8|AAA81050.1| 479|Caenorhabditis elegans Hypothetical
protein C06A8.5 protein.
Length = 479
Score = 26.6 bits (56), Expect = 9.0
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 273 PVLDVDISTILHGRPFSITKPF----LRRAEHCMGKVAEAPESPVSKCVSSMS 127
P+L + T+ +GRP KP + + H + +A P+ P +K + S
Sbjct: 371 PLLAAPLKTLNNGRPSFFIKPKNVEPMPQLGHSLSSIAVTPQKPAAKFTTRSS 423
>AL117195-10|CAB60771.1| 1072|Caenorhabditis elegans Hypothetical
protein Y57A10A.15 protein.
Length = 1072
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 317 FNGKKYEDICPSTHNMDVPHV 379
F K E +CP HN PHV
Sbjct: 25 FERKTIETVCPRVHNYLFPHV 45
>AF039710-9|AAB96685.2| 172|Caenorhabditis elegans Hypothetical
protein C46E10.8 protein.
Length = 172
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 143 HFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 295
H ET DSGA A + A +GF + P ++ +S + + G +V
Sbjct: 86 HLETADSGAHAIPSLGSPAPSSSGFATMIVPPAPLLSAISSGSPQLGDTRV 136
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,581,835
Number of Sequences: 27780
Number of extensions: 254799
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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