Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4428
(721 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 388 e-109
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 221 6e-59
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 208 6e-55
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 157 1e-39
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 112 4e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 109 4e-25
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 102 4e-23
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 64 2e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 50 3e-07
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.072
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.072
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.095
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.17
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 30 0.38
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.51
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.2
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy... 28 1.5
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 28 1.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 28 1.5
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 28 1.5
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.0
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 2.7
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch... 27 2.7
SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 27 2.7
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 2.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 3.6
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.7
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.7
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 26 4.7
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 6.2
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 6.2
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ... 26 6.2
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 6.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 388 bits (955), Expect = e-109
Identities = 177/190 (93%), Positives = 185/190 (97%)
Frame = +2
Query: 83 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 262
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 442
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 443 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 622
I+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAI+RLDLA
Sbjct: 122 IIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLA 181
Query: 623 GRDLTDYLMK 652
GRDLTDYLMK
Sbjct: 182 GRDLTDYLMK 191
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/23 (86%), Positives = 22/23 (95%)
Frame = +3
Query: 651 KILTERGYSFTTTAEREIVRDIK 719
KIL ERGY+F+TTAEREIVRDIK
Sbjct: 191 KILMERGYTFSTTAEREIVRDIK 213
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 221 bits (541), Expect = 6e-59
Identities = 98/183 (53%), Positives = 137/183 (74%), Gaps = 1/183 (0%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 280
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 281 KYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 457
+ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 458 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLT 637
N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+T
Sbjct: 132 LNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVT 191
Query: 638 DYL 646
DYL
Sbjct: 192 DYL 194
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 657 LTERGYSFTTTAEREIVRDIK 719
L + G+ ++AE+EIVR+IK
Sbjct: 198 LRKSGHELVSSAEKEIVREIK 218
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 208 bits (508), Expect = 6e-55
Identities = 97/189 (51%), Positives = 136/189 (71%), Gaps = 2/189 (1%)
Frame = +2
Query: 89 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 262
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 263 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 442
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 443 IMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLA 622
MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE L H + RLD+A
Sbjct: 122 TMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVA 181
Query: 623 GRDLTDYLM 649
GRD T YL+
Sbjct: 182 GRDATRYLI 190
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 157 bits (381), Expect = 1e-39
Identities = 87/214 (40%), Positives = 123/214 (57%), Gaps = 32/214 (14%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 229
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 230 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 388
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 389 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDS 544
LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DS
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDS 186
Query: 545 GDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYL 646
GDGV+H +P+ EGY + +I + LAGRD+T ++
Sbjct: 187 GDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFV 220
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 112 bits (270), Expect = 4e-26
Identities = 59/187 (31%), Positives = 105/187 (56%), Gaps = 3/187 (1%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 280
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 281 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 457
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 458 FNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 631
+N P++ I + S Y + + ++GIVL+ G+ SH +P+ G + R+ G
Sbjct: 142 YNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQ 201
Query: 632 LTDYLMK 652
+ YL+K
Sbjct: 202 SSSYLLK 208
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 109 bits (262), Expect = 4e-25
Identities = 63/187 (33%), Positives = 96/187 (51%)
Frame = +2
Query: 86 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 265
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 266 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 445
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 446 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAG 625
MFE+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 121 MFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSG 180
Query: 626 RDLTDYL 646
+ D L
Sbjct: 181 NAINDIL 187
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 102 bits (245), Expect = 4e-23
Identities = 53/182 (29%), Positives = 98/182 (53%), Gaps = 2/182 (1%)
Frame = +2
Query: 86 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 265
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 266 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 439
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 440 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 619
+ FE + PA Y+ QAV +A+ ++T +++D G + P+ +G + I + L
Sbjct: 122 EAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVDGLIIRKGIFKQSL 181
Query: 620 AG 625
AG
Sbjct: 182 AG 183
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 64.1 bits (149), Expect = 2e-11
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Frame = +2
Query: 287 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 454
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 455 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 634
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 635 TDYL 646
T +L
Sbjct: 232 TQHL 235
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 50.0 bits (114), Expect = 3e-07
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Frame = +2
Query: 101 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 280
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 281 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 448
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 449 FETFNTPAMYVAIQAVLSLYASGRTT--------------GIVLDSGDGVSHTVPIYEGY 586
FE F A A L + G T +V+DSG +H +P+ +
Sbjct: 118 FEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVIDSGYSFTHIIPVIDFS 177
Query: 587 ALPHAILRLDLAGRDLTDYL 646
A+ R+D+ G+ LT+YL
Sbjct: 178 VQEQAVKRVDVGGKLLTNYL 197
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.072
Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = +3
Query: 447 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*P 623
C+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT------ 224
Query: 624 VATSQTTS*KILTERGYSFTT 686
+TS TTS I T S +T
Sbjct: 225 TSTSCTTSTSIPTGGSSSLST 245
Score = 30.3 bits (65), Expect = 0.29
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Frame = +3
Query: 447 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*P 623
C+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT------ 167
Query: 624 VATSQTTS*KILTERGYSFTTT 689
+TS TTS I G S +T
Sbjct: 168 TSTSCTTSTSIPPTGGSSSLST 189
Score = 29.9 bits (64), Expect = 0.38
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 243 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 82
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 450 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVA 629
S ST PP S S + + + SC T ++ PT +T T + P+ T
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTT 424
Query: 630 TSQTTS 647
T+ TTS
Sbjct: 425 TNCTTS 430
Score = 27.1 bits (57), Expect = 2.7
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Frame = +3
Query: 450 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVA 629
S ++ P S S C+ T +PP T P ST T +P P P +
Sbjct: 324 STGTSSSPLPSTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP------PAS 375
Query: 630 TSQT-TS*KILTERGYSFTTT 689
TS T TS L S TT+
Sbjct: 376 TSSTGTSSSPLLSTSTSCTTS 396
Score = 26.6 bits (56), Expect = 3.6
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 459 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 635
ST P T S S P VPP S T + PT ST SP P+ + +TS
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 290
Score = 25.8 bits (54), Expect = 6.2
Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Frame = +3
Query: 450 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVA 629
S + P + S C+ T +PP T P ST T +P P P +
Sbjct: 270 STDTNSSPLPTTSTSCTTSTS--IPPTGNSTTPVTPTVPPTSTSSTSTPPP------PAS 321
Query: 630 TSQT-TS*KILTERGYSFTTT 689
TS T TS L S TT+
Sbjct: 322 TSSTGTSSSPLPSTSTSCTTS 342
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.072
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 471 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 605
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 31.9 bits (69), Expect = 0.095
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 462 TRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 635
++P TSP+ P +R P VP +S P P P PS P PS P+ TS
Sbjct: 997 SKPVSTSPAAPLARV--PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTS 1048
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 468 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 605
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 468 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 605
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 6.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 468 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 605
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.095
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 347 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 490
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.17
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 146 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 289
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 616 LSRSRPHRLPHERSSPSAATRSLPPPSGKSFVTS 717
LS +P R P +RSS + T S PP+ +S ++S
Sbjct: 146 LSSPQPSRAPIDRSSSNPVTSSQQPPNDRSTLSS 179
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 492 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 596
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -3
Query: 254 VPHLLHKSPSVPYRPSRPDGGAFPRSRGTR 165
+ L+ K+PS PY SRP A S TR
Sbjct: 306 IDQLISKAPSYPYSSSRPSASASLASSPTR 335
>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 241
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 595 PRHPASGLSRSRPHRLPHERSSPSAATRSLPPPSGKSF 708
P++P + L++ PH LPH R++ P G F
Sbjct: 150 PKNPHAFLAQDLPHGLPHRRAALPCEALGFHPNVGDYF 187
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +3
Query: 501 RCTRPVVPPVSCWTPATVSP-TPCPSTKDTHSPTPSCVWT*PVATS 635
R P P V + A SP TP P K+T +P+ S P ATS
Sbjct: 500 RVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS 545
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 27.9 bits (59), Expect = 1.5
Identities = 21/86 (24%), Positives = 40/86 (46%)
Frame = +1
Query: 403 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRR 582
+PQ + E++ D++R++ +RH RR P +A + R H + R R ++ R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR---QNGNVNR 1481
Query: 583 IRTPPRHPASGLSRSRPHRLPHERSS 660
+ ++ +SR R H S+
Sbjct: 1482 NPRVSNNNSTNVSRERSSEANHRTSN 1507
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/55 (29%), Positives = 24/55 (43%)
Frame = +3
Query: 543 PATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTTS*KILTERGYSFTTTAEREIV 707
PA P P P++ +PT + TT K+++E TT A +IV
Sbjct: 323 PAEAKPEPVPASAAERAPTSESTTVPETIVASTT--KVISEPAPRVTTAATADIV 375
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.5 bits (58), Expect = 2.0
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 474 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTT 644
C +PS+ C + PV + T S TP P+T + +PTP+ T T+Q+T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 492 PCSRCTRPVVPPVSCWTPATVSPTPCPST 578
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 634 HRLPHERSSPSAATRSLPPPSGKS 705
H P+E PS T ++P P GK+
Sbjct: 12 HFFPNEPQGPSIKTETIPGPKGKA 35
>SPCC622.02 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 127
Score = 27.1 bits (57), Expect = 2.7
Identities = 23/60 (38%), Positives = 28/60 (46%)
Frame = -1
Query: 283 FEGQDTSFALCLISYIRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHTGAIVYY 104
F G +F CLI++IR +SH D EHG II C T L G I+YY
Sbjct: 47 FAGLGIAFIYCLIAFIRE-MSHPSSR-------KDTMEHGL-PIILCST-LMLVGNILYY 96
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 2.7
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 468 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 575
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 508 RVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHERS-SPS 666
R RS HR+ G RR P+R HL R RH + R R R SP+
Sbjct: 142 RTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHSKRDDRYERRREHSPN 190
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -2
Query: 246 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 130
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 389 LLTEAPLNPKANREKMTQIMFETFN 463
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 625 SRPHRLPHERSSPSAATRSLPPPSGK 702
+R + ++PS RSLPPPSG+
Sbjct: 626 NRQYSFQPRPATPSNPPRSLPPPSGQ 651
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 4.7
Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 3/110 (2%)
Frame = +1
Query: 367 RPRGTPSPAH*G--SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRA- 537
R RG+P G +P +G P H + + ++A+ V Y
Sbjct: 132 RKRGSPDTPDSGHSTPHSKGDVHPGMPQHNTRFKQSSREFSSNTQAIDVANTPYELLPDY 191
Query: 538 GLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHERSSPSAATRSLP 687
L R+H R +R+ + P LS L H AAT LP
Sbjct: 192 SPDMSVLDKRSHPRPLRSEWKGPPLDLSNDENRHLLHPAELQLAATLRLP 241
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 6.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 128 TYRSHCLLPTRQLLRRTS*ISEI 60
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 6.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 283 FEGQDTSFALCLISYIRVLLSHTDHHA 203
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 668
Score = 25.8 bits (54), Expect = 6.2
Identities = 14/44 (31%), Positives = 16/44 (36%)
Frame = +1
Query: 556 LPHRAHLRRIRTPPRHPASGLSRSRPHRLPHERSSPSAATRSLP 687
LP R+H R PPR LP S S + S P
Sbjct: 426 LPERSHKHRHSAPPRSKLISSKSEAGRALPGNTSGASISNTSSP 469
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 489 KPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P-VATSQT 641
KP S+ TRP +P +T T S P P + + ++ P V++SQ+
Sbjct: 65 KPSSKATRPYIP---SYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSSQS 113
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 8.2
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Frame = +3
Query: 486 SKPCSRCTRPVVPPVSCWT---PATVSPTPCPSTKDTHSPTPSCVWT*PV 626
S+ S T P PP + T PA SP P + H PT S PV
Sbjct: 899 SRTSSVSTLPPPPPTASMTASAPAIASPPPPKVGETYHPPTASGTRVPPV 948
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,185
Number of Sequences: 5004
Number of extensions: 75589
Number of successful extensions: 306
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -