Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4427
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    27   3.4  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   3.4  
SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8 ...    25   7.9  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 47  TIGAAMLPLAALTSAFYFIP 106
           T G  +L L  LT AFY+IP
Sbjct: 466 TAGVVVLALYCLTGAFYYIP 485


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -1

Query: 238 FNILLEL*TVYCLNCVVY*SETYIKSCLTFSSVCCMSRDD 119
           F++L+ +  +  +    Y S TY K+ L  S  CCMS DD
Sbjct: 29  FSVLIPIFFIALIIIKRYHSCTYQKNRLLRSIFCCMSIDD 68


>SPAC6F12.14 |cut23|apc8|anaphase-promoting complex subunit Apc8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 575 YNVDGTFEVYIVHFWSLITFHRAS 646
           Y +  T+EV  +HF++L  F RA+
Sbjct: 410 YGLGQTYEVLDMHFYALYYFQRAT 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,000
Number of Sequences: 5004
Number of extensions: 47308
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)