Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4427
         (703 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1478 - 30420097-30420651                                         29   3.6  
04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887     28   6.2  
07_01_0512 - 3818743-3819087                                           28   8.3  

>06_03_1478 - 30420097-30420651
          Length = 184

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 31  DEAAANYRRRHVALGCSDERLLLYPYSAADRH 126
           D+A A++R +   +  +DER   YP    DRH
Sbjct: 33  DDAVASWREKLADMAAADERAGRYPCPLCDRH 64


>04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887
          Length = 253

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = +2

Query: 41  LPTIGAAMLPLAALTSAFYFIPTPRPIVTRHATHRRKS*TRFNISFTLIDDTI 199
           LP   A   P  A    +Y IP P P + RH    R   +RF+  +   D+T+
Sbjct: 198 LPYYAANATPYYA--GGYYPIPPPMPAMLRHPPQLRPQPSRFDEDYFNEDNTV 248


>07_01_0512 - 3818743-3819087
          Length = 114

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = -1

Query: 199 NCVVY*SETYIKSCLTFSSVCCMSRDDRPRSRDKVKGARQSSQGQHG 59
           N V   + T + +    S VCC  +   PRSRD   G R  S G  G
Sbjct: 21  NVVFLSAPTPLSAATRRSRVCCCPQGRGPRSRDLAAG-RPPSSGAEG 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,721,480
Number of Sequences: 37544
Number of extensions: 275363
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)