Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4426
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    29   0.94 
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   2.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   2.9  
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy...    27   2.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   2.9  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    27   2.9  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    27   2.9  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.8  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.8  
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    26   5.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    26   5.0  
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra...    26   6.6  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.6  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    25   8.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   8.7  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   8.7  

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 611 TDKNSSDEDSAPKSRSRNSHSKVKSDLWEENPDIYGIRRSARPR 742
           T     +   +P +    S  K++S  W + P++YG+RRS R R
Sbjct: 26  TPNLKQEMSESPSNSGVASKRKLQSTEWLD-PELYGLRRSGRTR 68


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 161 IRTYSSTKWRRFTRFCSQMILFNFSLFHENMIKIYL-FSILIR 286
           ++ YSST+        S+++L+ F+ F EN++K+ +  SI +R
Sbjct: 422 VQLYSSTESDLLKEGLSRILLYFFTYFPENILKLKIDTSIFLR 464


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 569 HNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEENP 706
           H+ D   S K    + ++S    SAPK R  +  SK  +     NP
Sbjct: 205 HDLDEVISEKDTSLSRRSSRGRSSAPKRRKDSGSSKTTATYIPHNP 250


>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 566 SHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEENPDIYGI 721
           S N+D  N    D    ++SSD +SAP S     H     D W +  D+  I
Sbjct: 294 SSNFDLNNLGGDDDLRSESSSDFESAPASIL--EHEPTNWDDWVQEADVTDI 343


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 599 SDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEEN-PDIYGIRRSARPRK 745
           SD  +D   SD++S     +  +   + ++ WEEN   + G R+  +  K
Sbjct: 67  SDEESDYEGSDDESNFSKTASRTEDDIANEEWEENLKAVAGFRKVRKGHK 116


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 560 KTSHNYDNANSSKSDH-HTDKNSS-DEDSAPKSRSRNSHSKVKS 685
           KT+  +D A  + SD    D NS  DEDS    +S+N+ S  KS
Sbjct: 141 KTNPVHDKAVENNSDFIKFDWNSDEDEDSVSNDKSKNNESLKKS 184


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +2

Query: 560 KTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDL 691
           +TS + +NA S+K    +D+N ++  +AP S   N   K ++++
Sbjct: 147 ETSTSVENAESAKGS--SDENEANTATAPSSNEANGVDKKQNEI 188


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +2

Query: 572  NYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSDLWEENPDI 712
            N +N N      HT +   +   A    +R  H   KSD W +N ++
Sbjct: 1436 NENNDNLRSVSRHTRR---EPQQAQNLNARREHESQKSDRWRQNGNV 1479


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 569 HNYDNANSSKSDHHTDK--NSSDEDSAPKSRSRNSHSKVKSDLWEENPD 709
           + Y   N  K D  + K   +S+  S  ++ SRN  +KVK D   E P+
Sbjct: 116 YKYLGGNRIKVDDSSPKLKQNSNNISKKQNSSRNDDTKVKKDTTIERPE 164


>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 575 YDNANSSKSDHHTDKNSSDEDSAPKSRSRN 664
           +D+ N ++ +HH D NSS     P   + N
Sbjct: 279 HDHENQTQLNHHLDNNSSISSHNPSLETAN 308


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 629 QNYFYQYDGQIL-MNSHYHSYVMFCYHHYDVNPLHQIF 519
           Q+Y Y+ D QI+ + + YH Y+M   HH    P    F
Sbjct: 848 QSYHYE-DCQIMDVRNDYHLYIMTWLHHSWTLPYRDYF 884


>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
           transcription Rct1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 432

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 629 DEDSAPKSRSRNSHSKVKSDLWEENPDIYGIRRSARPRKE 748
           DE+  P    R  H+ +  D +E+ PD+    RS  P  E
Sbjct: 152 DEEGQPYRDIRIKHTIILDDPFEDPPDLVEPLRSPSPTPE 191


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 587 NSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSD 688
           +SS++ HH    SS    AP  +  N HS  KSD
Sbjct: 243 SSSQAPHH----SSSSGHAPSQQGGNKHSYKKSD 272


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 560 KTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHSKVK 682
           K +HN D +++++S   TDK    ++   K   ++S +K +
Sbjct: 72  KKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTE 112


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 563 TSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSH 670
           +S N++N  +S S  H D  + D  +APK+ S+ ++
Sbjct: 362 SSDNHNNTTTS-SQVHPDSRNPDPKAAPKAVSQKTN 396


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 599 SDHHTDKN---SSDEDSAPKSRSRNS-HSKVKSDLWEE 700
           SDH + +    SS +DS  K  S NS ++K + D W E
Sbjct: 128 SDHASKRKIARSSSDDSESKVESTNSFNAKKRKDAWTE 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,586,301
Number of Sequences: 5004
Number of extensions: 47403
Number of successful extensions: 184
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)