Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4426
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40954-4|AAB52655.3|  157|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical p...    28   8.1  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    28   8.1  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    28   8.1  

>U40954-4|AAB52655.3|  157|Caenorhabditis elegans Hypothetical
           protein ZK813.3 protein.
          Length = 157

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 590 SSKSDHHTDKNSSDEDSAPKSRSRNSHSKVKSD 688
           +S+S+  +  +SSD DS   SRSR+  S  +SD
Sbjct: 80  NSRSNSRSSSSSSDSDSDSDSRSRSRSSSSESD 112



 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +2

Query: 569 HNYDNANSSKSDHHTDKNSSDEDSAPKSRSRNSHS 673
           H+ ++ ++S+S   +  + SD DS  +SRS +S S
Sbjct: 77  HHRNSRSNSRSSSSSSDSDSDSDSRSRSRSSSSES 111


>U55369-10|AAK52180.2|  389|Caenorhabditis elegans Hypothetical
           protein C18C4.9 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +2

Query: 560 KTSHNYDNANSSKSDHHTDKNSSDEDSAPKSRSR-NSHSKVKSDLWEENP 706
           K++H     + SKS HH     +  D  P+S S  +SH +  SD    +P
Sbjct: 7   KSTHGTTRVSHSKSAHHNSSRVT-SDVIPRSASAISSHERFFSDSQSSSP 55


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 617 KNSSDEDSAPKSRSRNSHSKVKSDLWEENPDIYGIRRSARPRKE 748
           +   DED  P  +S+   +K+ S+  EE P  +  RRS   R++
Sbjct: 786 EQEEDEDEIPIKKSKKRRAKIVSNDEEEEPVRHPKRRSDEKREK 829


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +2

Query: 617 KNSSDEDSAPKSRSRNSHSKVKSDLWEENPDIYGIRRSARPRKE 748
           +   DED  P  +S+   +K+ S+  EE P  +  RRS   R++
Sbjct: 786 EQEEDEDEIPIKKSKKRRAKIVSNDEEEEPVRHPKRRSDEKREK 829


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,059,745
Number of Sequences: 27780
Number of extensions: 257381
Number of successful extensions: 903
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)