Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4424
         (740 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0136 + 25928152-25928659,25928767-25928899,25928987-259290...    30   2.2  
05_06_0139 + 25952523-25952610,25952736-25953288,25953417-259539...    29   2.9  
02_04_0614 - 24400284-24400568,24400669-24400932,24401040-244011...    28   9.0  

>05_06_0136 +
           25928152-25928659,25928767-25928899,25928987-25929058,
           25929150-25929221,25929507-25929670,25929760-25930025,
           25930115-25930241,25930599-25930667,25930765-25930957,
           25931053-25931299,25931342-25931470,25932367-25932654
          Length = 755

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 440 YTYAYFIYNKKPFLYYNDIPINYYTE*YNTPLKP 541
           Y YA+ IYN  PFL Y    I+     YN+ ++P
Sbjct: 115 YLYAHAIYNTNPFLRYPQYNISINAT-YNSTMRP 147


>05_06_0139 +
           25952523-25952610,25952736-25953288,25953417-25953913,
           25953942-25953955
          Length = 383

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 440 YTYAYFIYNKKPFLYYNDIPINYYTE*YNTPLKPLKYAI 556
           Y YA  IY KKPFL Y +  I+      N+ L P+  AI
Sbjct: 325 YLYADLIYEKKPFLRYPEYNISINAT-SNSTLPPIINAI 362


>02_04_0614 -
           24400284-24400568,24400669-24400932,24401040-24401134,
           24401173-24401253,24401544-24402066
          Length = 415

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +3

Query: 618 PKHVLTG--FMVGSGLAPPLALADVHERR*PLTI 713
           PK VL    F +G G  PPL L+  H++  P+T+
Sbjct: 311 PKAVLVDLEFELGVGKLPPLTLSARHDKHFPITV 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,778,686
Number of Sequences: 37544
Number of extensions: 364411
Number of successful extensions: 695
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)