Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4420
         (387 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    28   0.59 
SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces ...    25   4.1  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   5.5  
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   7.2  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    24   9.6  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    24   9.6  

>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.9 bits (59), Expect = 0.59
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +2

Query: 17  NCEQQNKRAPDCLWDCGHVLRTYTGVVHARFHARLFIESE*YNGEPGPGYCLSFFDFLLF 196
           NC++ +  +P+ +W  G      T  V +   + + + S   N +P     L+     LF
Sbjct: 65  NCKKLHLISPN-IWCAGAGTAADTEFVTSMISSNIELHSLYTNRKPRVVTALTMLKQHLF 123

Query: 197 RWVDKLTNYLVLSGY 241
           R+   +  YLVL GY
Sbjct: 124 RYQGHIGAYLVLGGY 138


>SPAC2E12.03c |||G-protein coupled receptor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 184 FPIV*MGGQAHELPSVKWLPEPIDIYNVNAAT 279
           +P+V MG  A  L ++ +LP+ I I+   A T
Sbjct: 140 WPVVFMGVLATVLVNIGFLPQYISIFRARAVT 171


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 49  LLVGLRACPAHLHGRCTRAFSR 114
           LL+G+  CPA +   C   FSR
Sbjct: 429 LLMGVLVCPAVVPATCVMLFSR 450


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +3

Query: 54  CGTAGMSCAPTRALYTRVFTLDFLSKVSDIMANPGLVIASHF 179
           C + G++ +PT+   T  +T   L   ++I  +  +  + HF
Sbjct: 537 CSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHF 578


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = +2

Query: 77  RTYTGVVHARFHA-RLFIES 133
           RT  GV+H +FHA RL + S
Sbjct: 294 RTVYGVIHKKFHAVRLTLRS 313


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 201 HLNNRKSKNERQ*PGPGSPLYHSLSIKSRA*KRACTTPV*VRRTCPQ 61
           H+N   + +    P  G P   S SI  R      ++P   RR CP+
Sbjct: 386 HVNKNAAADRTTSPTQGQPESPSKSILLRPPPSIASSPESKRRKCPK 432


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,631,575
Number of Sequences: 5004
Number of extensions: 30681
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)