Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4417
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 214 6e-57
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 81 1e-16
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 63 2e-11
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 62 4e-11
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 54 1e-08
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 51 1e-07
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 28 0.75
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 1.7
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 27 2.3
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 4.0
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 4.0
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 5.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 5.3
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce... 25 7.0
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 7.0
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 7.0
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 9.2
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 214 bits (523), Expect = 6e-57
Identities = 109/172 (63%), Positives = 132/172 (76%)
Frame = +3
Query: 6 LIEQKLHPQTIIAGWRIAFDAAKQALAEASFDHQKNLNEASLRVDLENIGRTTLSSKILS 185
++ K+HPQ II G+RIA A AL +S D+ + A R DLENI RTTLSSKILS
Sbjct: 112 MVNAKIHPQVIIDGYRIATKTAIDALRASSIDNSSD--PAKFRSDLENIARTTLSSKILS 169
Query: 186 NHKEHFTKLAVDAVLRLKGSGNLKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKKVE 365
+K HF +LAVDAVLRLKGS NL IQIIKI GG L++SFLDEGF+LNK +GV+ PK +E
Sbjct: 170 QNKNHFAQLAVDAVLRLKGSTNLDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVME 229
Query: 366 NANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 521
NANILIANT MDTDK+KVFG+ ++VD+ K+AELE AE+EKMK KV KI +H
Sbjct: 230 NANILIANTAMDTDKVKVFGARVRVDTTGKLAELERAEREKMKAKVEKIKSH 281
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 81.0 bits (191), Expect = 1e-16
Identities = 56/180 (31%), Positives = 97/180 (53%), Gaps = 9/180 (5%)
Frame = +3
Query: 3 KLIEQKLHPQTIIAGWRIAFDAAKQALAEASFDHQKNLNEASLRVDLENIGRTTLSSKIL 182
+L++ K+HP TII G+R+A A + + + +L + SL N+ +T++SSKI+
Sbjct: 111 ELVKNKIHPTTIITGYRLAIREAVKFMTDVLSCSVDSLGKESLI----NVAKTSMSSKII 166
Query: 183 SNHKEHFTKLAVDAVLRLKGSGN-------LKAIQIIKISGGLLEESFLDEGFLLNKKVG 341
N + F+ +AVDA+L +K S + +KA+ I+K G ES L +G+ LN +
Sbjct: 167 GNDSDFFSTMAVDAMLSVKTSNSKGETRYPVKAVNILKAHGKSSRESVLVKGYALNCTIA 226
Query: 342 VHQPK-KVENANILIANTPMDTDKIKV-FGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL 515
K +V+NA I + + MD K K+ G + +D ++ ++ E ++V KIL
Sbjct: 227 SQAMKTRVQNAKIAVLD--MDLQKTKMALGVHVTIDDPDQLEKIREREVMITLERVKKIL 284
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 63.3 bits (147), Expect = 2e-11
Identities = 49/174 (28%), Positives = 89/174 (51%), Gaps = 5/174 (2%)
Frame = +3
Query: 6 LIEQKLHPQTIIAGWRIAFDAAKQALAEASFDHQKNLNEASLRVDLENIGRTTLSSKILS 185
LI++ +HP I G+ A A + L +A D E + +L +T+L SK++S
Sbjct: 125 LIDKGIHPIRIADGYEKACQVAVKHL-DAISDVVDFSPENT--TNLFRSAKTSLGSKVVS 181
Query: 186 NHKEHFTKLAVDAVLRLKGSGNLKA-IQIIKIS---GGLLEESFLDEGFLLNKKVGVHQ- 350
+HF +AVDAVL + ++IK+ GG ++++ L +G +++K + Q
Sbjct: 182 KAHDHFANIAVDAVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQM 241
Query: 351 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKI 512
P ++ENA I I P + K K + + S+++ L+ EKEK ++ + +
Sbjct: 242 PHRIENAKIAILTCPFEPPKPKT-KHKLDITSVSEFEALQAYEKEKFQEMIKHV 294
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 62.5 bits (145), Expect = 4e-11
Identities = 50/175 (28%), Positives = 81/175 (46%), Gaps = 5/175 (2%)
Frame = +3
Query: 9 IEQKLHPQTIIAGWRIAFDAAKQALAEASFDHQKNLNEASLRVDLENIGRTTLSSKILSN 188
+E + II G+R A A + E + H +E LR L T ++SK++ +
Sbjct: 116 VEDGVSSHLIIRGYRKAAQLAVNKIKEIAI-HLDLSDEGKLRDLLTKCASTAMNSKLIRS 174
Query: 189 HKEHFTKLAVDAVLRLKGSG-NLKAIQIIKISGGLLEESFLDEGFLLNKKVGV----HQP 353
+ FTK+ VDAVL L N I I K+ GG +E+S L +G K QP
Sbjct: 175 NSTFFTKMVVDAVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQP 234
Query: 354 KKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILA 518
K +N IL + ++ K + + ++VD + + + AE + K+ I+A
Sbjct: 235 KFFKNPKILCLDVELEL-KAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVA 288
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 54.4 bits (125), Expect = 1e-08
Identities = 48/176 (27%), Positives = 85/176 (48%), Gaps = 4/176 (2%)
Frame = +3
Query: 9 IEQKLHPQTIIAGWRIAFDAAKQALAEASFDHQKNLNEASLRVDLENIGRTTLSSKILSN 188
I + LHP I G+ +A + A L D + + R L N+ +T+LS+KI S
Sbjct: 108 IREGLHPSLISDGFNLAKNEALTFLDSFKTDFEVD------REVLLNVAKTSLSTKISSK 161
Query: 189 HKEHFTKLAVDAVLRLKGSG---NLKAIQIIKISGGLLEESFLDEGFLLNKKVG-VHQPK 356
E VDA+L ++ +L ++I+K+ ++ L G LL+ PK
Sbjct: 162 VVESLAPAVVDAILTIRRPDEPIDLHMVEIMKMQNRSASDTQLIRGLLLDHGARHPDMPK 221
Query: 357 KVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHK 524
+V+NA ILI N ++ +K ++ S + + L +E++ + +K+ KI+ K
Sbjct: 222 QVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKFVDNKLRKIVELK 276
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 50.8 bits (116), Expect = 1e-07
Identities = 47/178 (26%), Positives = 82/178 (46%), Gaps = 9/178 (5%)
Frame = +3
Query: 3 KLIEQKLHPQTIIAGWRIAFDAAKQALAEASFDHQKNLNEASLRVDLENIGRTTLSSKIL 182
KL+++ +HP I ++ A + E + + + E+ LR T+L+SKI+
Sbjct: 109 KLLKKGIHPTVIAESFQRAAGFTVDCMKENALAIELSDRESLLRA-----ATTSLNSKIV 163
Query: 183 SNHKEHFTKLAVDAVL-----RLKGSGNLKAIQIIKISGGLLEESFLDEGFLLNKKV--G 341
S + +AVDAVL R+ + +LK I+I+K GG+++++ L G L +
Sbjct: 164 SQYSNLLAPIAVDAVLKVIDPRVATNVDLKDIRIVKKLGGIIDDTELIPGLALTQTAVKS 223
Query: 342 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVD--SMAKIAELEVAEKEKMKDKVNK 509
P ++E ANI + + K + + D M KI + E M K+ K
Sbjct: 224 AGGPTRIEKANIALIQFQLSPPKPDMENQVVVNDYRQMDKILKEERQYLLNMCKKIKK 281
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 28.3 bits (60), Expect = 0.75
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 129 LRVDLENIGRTTLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 275
L V E++ LS LS +K T ++ +LR GS LKAI ++K
Sbjct: 518 LPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLK 566
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 321 LLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGST 431
L N P K E N++ AN + DK + FGS+
Sbjct: 108 LYNHMSSAPSPNKKEETNVVHANEDISLDKRQSFGSS 144
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 342 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 521
+H+ K E T K+KV+G + ++I+ L + KEK KD ++ H
Sbjct: 616 IHKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALH 671
Query: 522 K 524
K
Sbjct: 672 K 672
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 408 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 524
K+K G T++ D A VA K+ K K K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.8 bits (54), Expect = 4.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 158 DYTELKDPFKSQRAFHKISS*CSFAFERI 244
D +L +P+++ FH S C F F+ +
Sbjct: 107 DVAQLVEPYRNDCIFHDASGACHFFFKEV 135
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 5.3
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -3
Query: 375 C*HFLLSLVDVHQLFCLARTL 313
C HF LS V VH FC + L
Sbjct: 106 CHHFKLSKVKVHLFFCRLKLL 126
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 5.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 162 TLSSKILSNHKEHFTKLAVDAVLRLKGSGNLKAIQIIK 275
T +KILS+H E TK V + GS +L A + K
Sbjct: 2222 TTHAKILSSHPEWDTKAVTLTVSYIPGSISLAAYTVSK 2259
>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 363
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = +3
Query: 345 HQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAEL----EVAEKEKM 491
H PKKV+ +L T T+ K + + ++ K +L EV EK K+
Sbjct: 51 HDPKKVQQCTLLSIKTGGCTEDCKYCAQSSRYNTGVKATKLMKIDEVLEKAKI 103
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 147 NIGRTTLSSKILSNHKEHFTKLAVDAV 227
N+GR T+ I SN+ +K VDAV
Sbjct: 82 NMGRMTMLDAIKSNYISDMSKADVDAV 108
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 7.0
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 384 ANTPMDTDKIKVFGSTIKVDSMAKIAEL-EVAEKEKMKDKVNKILAHK 524
A+ DT +I DS A + E +V E+++ KD+ NK HK
Sbjct: 390 ASDVSDTAEISEKTEAKNADSEANLEEKSDVGEEKESKDENNKASLHK 437
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 24.6 bits (51), Expect = 9.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 3 KLIEQKLHPQTIIAGWRIAFDAAKQALAEASFDH 104
KLI+ T + G +AFD Q LA SFDH
Sbjct: 175 KLIKVIEGHHTFVGG--LAFDPMGQFLASQSFDH 206
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,517
Number of Sequences: 5004
Number of extensions: 40895
Number of successful extensions: 129
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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