Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4128
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso... 33 0.16
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso... 33 0.16
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor... 33 0.16
AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensor... 33 0.16
AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensor... 33 0.16
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor... 33 0.16
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor... 33 0.16
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 33 0.16
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor... 33 0.16
U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF164625-1|AAD47816.1| 944|Caenorhabditis elegans tandem-array-... 29 2.6
AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array ... 29 2.6
Z78537-2|CAB01720.2| 604|Caenorhabditis elegans Hypothetical pr... 24 5.3
U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical pr... 28 8.1
>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform g protein.
Length = 1604
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 247 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 304
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 305 KMEEPKRSNYKQ 316
>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform f protein.
Length = 1818
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 461 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 518
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 519 KMEEPKRSNYKQ 530
>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform e protein.
Length = 1954
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 597 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 654
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 655 KMEEPKRSNYKQ 666
>AF067945-7|ABQ13059.1| 954|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform i protein.
Length = 954
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 646 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 703
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 704 KMEEPKRSNYKQ 715
>AF067945-6|AAV28326.1| 1167|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform c protein.
Length = 1167
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 646 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 703
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 704 KMEEPKRSNYKQ 715
>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform b protein.
Length = 1685
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 646 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 703
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 704 KMEEPKRSNYKQ 715
>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform d protein.
Length = 1995
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 638 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 695
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 696 KMEEPKRSNYKQ 707
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 650 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 707
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 708 KMEEPKRSNYKQ 719
>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform a protein.
Length = 2007
Score = 33.5 bits (73), Expect = 0.16
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +3
Query: 216 YDYLDVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRILPEALRTKCIRCTERQKRTSV 395
YD D F K L +N+ DC N Q G+ALK++ PE T T T+
Sbjct: 650 YDSSCGDQDFSKKNLFKNFDDC--NNQCVKKIGEALKKMDPETTTTTSTTTTTTTAPTTT 707
Query: 396 KVIRRLKNEYPE 431
K+ ++ Y +
Sbjct: 708 KMEEPKRSNYKQ 719
>U39676-3|AAB37032.2| 941|Caenorhabditis elegans Hypothetical
protein C23F12.2 protein.
Length = 941
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 200 RHTHHCVDVLSHHNKHTSIQKNHST 126
+H +H SHH +HT Q++H T
Sbjct: 549 QHVNHIAQTKSHHQQHTQQQQHHQT 573
>AF164625-1|AAD47816.1| 944|Caenorhabditis elegans
tandem-array-modifier protein protein.
Length = 944
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 568 HPRPLHRRLRDQPPYLQTLHRR*CPRH 648
HP P+H +++ PP + +H++ P H
Sbjct: 460 HPPPMHHQMQQGPPRMMYMHQQHHPMH 486
>AF022974-6|AAC48041.1| 944|Caenorhabditis elegans Tandem array
expression modifierprotein 1 protein.
Length = 944
Score = 29.5 bits (63), Expect = 2.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 568 HPRPLHRRLRDQPPYLQTLHRR*CPRH 648
HP P+H +++ PP + +H++ P H
Sbjct: 460 HPPPMHHQMQQGPPRMMYMHQQHHPMH 486
>Z78537-2|CAB01720.2| 604|Caenorhabditis elegans Hypothetical
protein C09F12.2 protein.
Length = 604
Score = 23.8 bits (49), Expect(2) = 5.3
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +3
Query: 168 GQDINAMMSMPKYDERYDYL-DVDDIFRNKRLVRNYVDCLINAQRCTPEGKALKRIL 335
G + ++ + Y E D L D + ++ + + CL+ + TP+ + KRIL
Sbjct: 168 GLKMKHLVGLCVYKEPLDLLMDTIESIASQPNAKEKITCLVGMEGGTPDKEEKKRIL 224
Score = 23.0 bits (47), Expect(2) = 5.3
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +3
Query: 327 RILPEALRTKCIRCTERQKRTSVKVIRRLKNEYPEEWAKLASRWDPTGDFTRYFED 494
R LP + KC RT+VK++R KN EE+ TGD F D
Sbjct: 242 RGLPGDIPGKCSNFNYAA-RTAVKMLRADKNYPLEEYDNNVELIVTTGDCDSVFGD 296
>U21323-1|AAM22050.1| 542|Caenorhabditis elegans Hypothetical
protein C45G9.6a protein.
Length = 542
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 237 DIFRNKRLVRNYVDCLINAQRCTPEGK 317
D+F+ R + DC I+ QRCTP G+
Sbjct: 412 DMFKKHRQCLYHSDC-ISGQRCTPTGR 437
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,334,933
Number of Sequences: 27780
Number of extensions: 343417
Number of successful extensions: 938
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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