Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4126
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.15
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.2
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 26 4.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.2
SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces pombe... 26 4.2
SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family protein|Schizosacchar... 26 4.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 5.5
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 5.5
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.5
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 26 5.5
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar... 25 7.3
SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomy... 25 7.3
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac... 25 7.3
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.7
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 25 9.7
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 31.1 bits (67), Expect = 0.15
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 4/131 (3%)
Frame = -1
Query: 577 NGSLDSLFCKTGDDITNLNSWGSS*GEHVPSASFRLDLRIWTGHGGGRYLNSGCVLNSVD 398
+ SL S T ++L+S SS V S S YL+S V++S
Sbjct: 161 SSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSS 220
Query: 397 KRNASTMSLSSKSWKITFRQPSIASGSSSR----TVFSILPTSDSTSISFNVIEKGLSEF 230
++S+ S + S T PS +S SSS + S T+ S+S S ++I S
Sbjct: 221 SPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSS 280
Query: 229 ELPTLFETFLS 197
PT + +S
Sbjct: 281 SSPTSTSSTIS 291
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = -1
Query: 409 NSVDKRNASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSDSTSISFN 257
+S +++S+ S SSKS + +S SSS + S P+S +S F+
Sbjct: 172 SSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFS 222
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -1
Query: 364 KSWKITFRQPSIASGSSSRT--VFSILPTS 281
+SW+I QP+ S SS + + S+LPTS
Sbjct: 160 RSWEIELAQPAALSSQSSLSPKLSSVLPTS 189
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 391 NASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSDSTSISFNVIEKGLS 236
++S+ +LSS S + S SSS + S +P+S S+ S ++ GLS
Sbjct: 117 SSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLS 168
>SPAC12G12.11c |||DUF544 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +3
Query: 444 PCPVQILRSSLKLAEGTCSPYELPQE 521
PCP+ L ++L L P+ELP++
Sbjct: 58 PCPIIALSNALILKSNVDRPFELPKK 83
>SPAC14C4.01c ||SPAC19D5.08c|DUF1770 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 334 SIASGSSSRTVFSILPTSDSTSISFNVIEKGLSEFELPTLFE 209
++ S +SS ++ DS++ E + E ELPT+FE
Sbjct: 98 AVESSTSSLSLLQSKEEDDSSNWETEDSESAVEEAELPTIFE 139
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = -3
Query: 482 QLQAGSQDLDGARRRPVPELRLRFEQRRQTECVDDESELQKLEDHLP 342
QLQ G QD+ ++ L F Q+E V + SE + +ED LP
Sbjct: 4367 QLQDG-QDISDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDELP 4412
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 5.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -1
Query: 388 ASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSDSTSISFN 257
A T + +S + T P+ +S S+ + SI+PTS TS FN
Sbjct: 646 APTSTFTSSGFNTTSGLPT-SSASTPSSNSSIVPTSTFTSSGFN 688
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = -1
Query: 412 LNSVDKRNASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSDSTSISFNV 254
LNS A++ SLSS + + S+AS S + T + T+ S+SIS V
Sbjct: 200 LNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSA---TATSSSISSTV 249
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -1
Query: 409 NSVDKRNASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSDSTSIS 263
+S ++S+ S SS S + S +S SSS + S +P + STS S
Sbjct: 169 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSS 217
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 5.5
Identities = 7/24 (29%), Positives = 18/24 (75%)
Frame = -3
Query: 386 VDDESELQKLEDHLPPTVNRFGLL 315
++DE ++K+ +HLPP++ + ++
Sbjct: 119 MEDEKLIEKVNEHLPPSIRLWDVI 142
>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1689
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 12 DPVQKFYSLKI-IMNWFEENLEYGRLREEIEHSMWNAYFK 128
D K Y++++ + + E EYG L+EEIE + N + K
Sbjct: 1291 DEQSKTYAIRLDLYSRDEYQDEYGVLQEEIESTFSNRFLK 1330
>SPCC553.06 |||oligosaccharyltransferase subunit|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -2
Query: 567 LTVCFAKPETISLISILGVARK 502
L++CF+ +SLI +LGV +K
Sbjct: 189 LSICFSVSVVVSLIGLLGVWQK 210
>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 593
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 132 EPNSIFLNNYANTLHFIA 185
EPN L NY +LH++A
Sbjct: 154 EPNDSCLENYCGSLHYLA 171
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 318 EPEAIDGWRKVIFQLLELRLI 380
EPE +D +++F+LL LRL+
Sbjct: 97 EPEILDTNSELLFELLRLRLL 117
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 291 NIENTVLLEEPEAIDGWRKVIFQLLELRLIVDA 389
N NT+L +DG+ + L +RL+VDA
Sbjct: 305 NATNTILQLLDSKVDGFHDIFDGRLFIRLVVDA 337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,493,946
Number of Sequences: 5004
Number of extensions: 48593
Number of successful extensions: 185
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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