Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4126
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203...    30   1.9  
08_01_0626 - 5445676-5446687,5447099-5447430                           29   4.3  
09_03_0079 + 12142390-12142459,12142792-12143006,12143050-121432...    28   5.7  
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585...    28   7.6  
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797...    28   7.6  
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65...    28   7.6  

>02_04_0039 - 19118632-19118820,19119018-19119395,19120151-19120345,
            19120425-19120502,19120567-19120752,19120828-19121058,
            19121137-19121490,19121588-19121785,19121869-19122039,
            19122156-19122263,19122362-19122580,19122665-19122871,
            19122978-19123196,19123315-19123389,19123749-19123901
          Length = 986

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/82 (25%), Positives = 37/82 (45%)
 Frame = -1

Query: 451  GHGGGRYLNSGCVLNSVDKRNASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSDST 272
            GH    YLN  C+LNS  +  A      +   K      S   G+ +  + +++     T
Sbjct: 864  GHEAAVYLND-CLLNSQKQYRAMIEERDTSGGK------SKGQGTGTILIVTLVDAETET 916

Query: 271  SISFNVIEKGLSEFELPTLFET 206
            SI+  ++E+GL+  E    ++T
Sbjct: 917  SINATMLEEGLARLERSKRWDT 938


>08_01_0626 - 5445676-5446687,5447099-5447430
          Length = 447

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 36  LKIIMNWFEENLEYGRLREEIEHSM 110
           LKI M WF+E+     +  E+EH M
Sbjct: 169 LKIHMRWFDEDAMESEMEHEMEHEM 193


>09_03_0079 +
           12142390-12142459,12142792-12143006,12143050-12143268,
           12143345-12143932
          Length = 363

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -1

Query: 427 NSGCVLNSVDKRNASTMSLSSKSWKITFRQPSIASGSSSRTVFSILPTSD 278
           N+  VL     R++  M    +++   +RQ  I   S  +T F+++P SD
Sbjct: 30  NARPVLEIFTARSSQEMKQICRAYSSMYRQDLIQLLSQQKTTFAVIPASD 79


>11_05_0100 -
           19056465-19056470,19057043-19057276,19058391-19058546,
           19059639-19059763,19059912-19059983,19060080-19060184,
           19060691-19060745,19061576-19061656,19062806-19062869,
           19064715-19064782,19064947-19065033,19066121-19066285,
           19066310-19066429,19066485-19066607,19066738-19067019,
           19067936-19068075,19068234-19068335,19068802-19068874,
           19069061-19069171
          Length = 722

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = -1

Query: 472 LDLRIWTGHGGGRYLNSGCVLNSVDKRNASTMSLSSKSWKITFRQPSIASGSSSRTVFSI 293
           LD R  TGHG G YL      + +  R ++       S  +T        GS    + ++
Sbjct: 507 LDYRHGTGHGVGSYLTVHEGPHQISFRPSARNVPLQASMTVTDEPGYYQDGSFGIRLENV 566

Query: 292 LPTSDSTSISFNVIEKGLSEFE 227
           L   D+ +  FN  +KG   FE
Sbjct: 567 LIVQDANT-KFNFGDKGYLAFE 587


>03_06_0128 -
           31879286-31879381,31879463-31879574,31879680-31879747,
           31880959-31881072,31881207-31881247,31881340-31881393,
           31881785-31881866,31882063-31882116
          Length = 206

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 57  FEENLEYGRLREEIEHSMWNAYFKTEPNSIFLNNYAN 167
           F+E+ E  +L +EI    WNA F+   N++FL    N
Sbjct: 44  FKEDEEKEKLAKEIAKD-WNAVFERSINTLFLTEMIN 79


>03_01_0082 +
           653041-653137,653219-653496,653596-653689,653804-653886,
           654027-654247,654395-654533,654628-654710,654824-655036,
           655099-655494,655587-655758,656085-656276,656363-656569,
           656661-656753,656957-657156,657329-657838,658114-658184,
           658322-658963,659057-659207,659425-659665
          Length = 1360

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 607 PKKDLRNYL*NGSLDSLFCKTGDDITNLNSWGSS--*GEHVPSASFRLDLRIWTGH 446
           P+K    Y+  G  D     TG+ I +   W SS   GEHV  ++ R    +  G+
Sbjct: 802 PEKSSNLYIATGCEDGTMRLTGNSINSAGKWCSSKLLGEHVGGSAVRATCFVQKGY 857


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,857,661
Number of Sequences: 37544
Number of extensions: 313989
Number of successful extensions: 1006
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)