Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4126
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81517-7|CAE11306.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC006729-10|AAL32234.1|  487|Caenorhabditis elegans Hypothetical...    28   5.1  
AL110479-19|CAB54366.1|  222|Caenorhabditis elegans Hypothetical...    28   6.8  
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z78065-9|CAI79172.1|  273|Caenorhabditis elegans Hypothetical pr...    27   8.9  
Z78064-11|CAI79210.1|  273|Caenorhabditis elegans Hypothetical p...    27   8.9  
AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin re...    27   8.9  

>Z81517-7|CAE11306.1|  329|Caenorhabditis elegans Hypothetical
           protein F28B1.8 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 232 FELPTLFETFLSFCPVAMKCNVFA*LFKNMLF 137
           FE+P +F+T+L F  + M CN    + +N  +
Sbjct: 85  FEVPIIFQTYLIFTSLLMVCNAILVMVENRYY 116


>Z93389-1|CAB07668.1|  346|Caenorhabditis elegans Hypothetical
           protein T13F3.1 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 489 GTCSPYELPQELRLVISSPVLQNKLSSEPFYK*FLKSFFGHLIYH 623
           GTC  Y++ Q++R+ IS   +   L  + FY   +++    L+ H
Sbjct: 223 GTCCYYKIQQQMRVAISLSKITKNLHRQLFYALAIQTAIPMLLLH 267


>Z93378-4|CAE17803.1|  514|Caenorhabditis elegans Hypothetical
           protein F19H8.5 protein.
          Length = 514

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = -1

Query: 352 ITFRQPSIASGSSSRTVFSILPTSDSTSISFNVIEKGLSEFELPTLFETFLSFCPVAMKC 173
           I    P   S S+ +   ++L  +D+ S +F  +EK LS+ +   L E+  SF  +    
Sbjct: 233 IKLLNPEKQSFSNQQEKEAVLSATDNMSQNFENLEKSLSKNQKTELKESGFSFLEMPQME 292

Query: 172 NVF 164
           N+F
Sbjct: 293 NLF 295


>AC006729-10|AAL32234.1|  487|Caenorhabditis elegans Hypothetical
           protein Y24D9A.1b protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +3

Query: 438 PPPCPVQILRSSLKLAEGTCSPYELPQELRLVISSPVLQNKLSSEPFYK*FLKSF 602
           PPP PVQ++      ++    P    +  R   SSP L+   SS+P  K F+ +F
Sbjct: 435 PPPPPVQVVTPQTTSSQTETGPLPPKRTKRPESSSPQLER--SSQPASKVFIWNF 487


>AL110479-19|CAB54366.1|  222|Caenorhabditis elegans Hypothetical
           protein Y105C5B.20 protein.
          Length = 222

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -3

Query: 476 QAGSQDLDGARRRPVPELRLRFEQRRQTECVDDESELQKL 357
           +   QDL G+R+ P  E+  RF Q++ T   D E  ++ L
Sbjct: 127 EMAEQDLIGSRKTPFYEMFTRFAQQKVTSS-DQEDTIENL 165


>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
           protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 33  SLKIIMNWFEENLEYGRLREEIEHSMWNAYFKTEPNSIFLNNYANTLHFIA 185
           SL   MNWF +N E  R+     H +W    +    S+ L   A+ ++F+A
Sbjct: 553 SLLTEMNWFLKNAEMARVYGIQFHEVWTRGSQLRVESMLL-RLAHRMNFVA 602


>Z78065-9|CAI79172.1|  273|Caenorhabditis elegans Hypothetical
           protein F57B1.8 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 298 SILPTSDSTSISFNVIEKG-LSEFELPTLFETFLSFCPVAMKCNVF 164
           +IL    S  I   +I+K  L+ +EL  L +  L FCP  +  +VF
Sbjct: 153 TILAVYTSVIIRMVLIKKSALNSYELTILKQAILIFCPFQISSSVF 198


>Z78064-11|CAI79210.1|  273|Caenorhabditis elegans Hypothetical
           protein F57B1.8 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -1

Query: 298 SILPTSDSTSISFNVIEKG-LSEFELPTLFETFLSFCPVAMKCNVF 164
           +IL    S  I   +I+K  L+ +EL  L +  L FCP  +  +VF
Sbjct: 153 TILAVYTSVIIRMVLIKKSALNSYELTILKQAILIFCPFQISSSVF 198


>AF106592-1|AAK21365.2|  654|Caenorhabditis elegans Semaphorin
           related protein 2 protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 492 TCSPYELPQELRLVISSPVLQNKLSSEPFYK*FLKSFFGHLIYHQHSPD 638
           TCS     +EL  +   P+++ K+S+ P Y    K  F H++  + + D
Sbjct: 341 TCSRANDIEELSRIRLKPLIKQKISANPIYIFHGKDRFVHVLAQEDTRD 389


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,487
Number of Sequences: 27780
Number of extensions: 272967
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)