Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4124
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    25   8.9  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -1

Query: 381  VGTMHVAVKYGGCILDTLKKLSQSL*FYSNQSNSPL 274
            + T+ V +K+ G  L TLKK S+ L   + Q ++PL
Sbjct: 4142 MNTIPVRIKFEGA-LQTLKKTSRMLINLAKQQHTPL 4176


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 435  SKILRTQTVFYNYILCYVVGTMHVAVKYGGCIL-DTLKKLS 316
            S I+  QT FYN++  ++     +   Y   +L DT++ LS
Sbjct: 1451 SGIVSRQTFFYNFLTIFLDTLKSIVTNYYAYVLDDTIELLS 1491


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,219
Number of Sequences: 5004
Number of extensions: 56697
Number of successful extensions: 134
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)