Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4124
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0154 - 28059097-28060641                                         29   5.3  
02_05_0684 - 30880527-30880753,30881952-30882124,30882687-308827...    28   9.3  

>05_07_0154 - 28059097-28060641
          Length = 514

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 42  NLTKLHPIAI*FHDNLIYFLFLFIRFVKNALLKP 143
           N+T L P+ + F + L++F  L  + + NA +KP
Sbjct: 355 NITTLGPLVLPFSEQLLFFATLVAKKLFNAKIKP 388


>02_05_0684 -
           30880527-30880753,30881952-30882124,30882687-30882754,
           30882860-30882973,30883281-30883438,30883516-30883654,
           30883851-30883907,30884064-30884140,30884324-30884462,
           30884590-30884668,30885047-30885174,30885269-30885352,
           30886072-30886191,30886274-30886375,30886470-30886617,
           30887404-30887749,30887851-30887968,30888309-30888370,
           30888798-30888947,30889049-30889169,30889269-30889319,
           30889427-30889567
          Length = 933

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = -3

Query: 391 VLCSWYHARSSKIWRMHTRYSQKTQSKLIILLQSVKFATLNEFI*QNRDILIDKIFRDVN 212
           VLC    A+   + +++++ S +T +K+  LLQ    A       Q +  L+ K+ R ++
Sbjct: 781 VLCQVEKAKEDMLNQLYSKISAQTNAKIEELLQEDHNAKRRREKYQKQSSLLSKLTRQLS 840

Query: 211 FH 206
            H
Sbjct: 841 IH 842


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,960
Number of Sequences: 37544
Number of extensions: 287070
Number of successful extensions: 547
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)