Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4124
         (759 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    31   0.89 
Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical pr...    28   8.3  

>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 29/98 (29%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
 Frame = -1

Query: 699 LFYLFNIYLQLYRPNLKIVYTV------YSFC--MASLYELAL--CKLTRIFKTLNFNLI 550
           LF +F +    ++P+L +VY +      YSFC  +  +Y LA+   K   +   + F LI
Sbjct: 27  LFTIFYLKKIAFKPDLTLVYLILAGDAGYSFCVGLLKIYTLAITFSKALIVKNLILFLLI 86

Query: 549 AELLSMVINSD-*YSY*NFRYV*GIHFKSSFKHPKPST 439
           A +L  VI +   +S   FR++  I+F+ S+ +    T
Sbjct: 87  ASILFGVIRTTLIFSIALFRFI-AIYFQISYHNNSHKT 123


>Z73905-4|CAI91175.1|  536|Caenorhabditis elegans Hypothetical
           protein C32C4.7 protein.
          Length = 536

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 87  LIYFLFLFIRFVKNALLK 140
           L+YFLF F+R + N LLK
Sbjct: 505 LVYFLFTFLRLLLNLLLK 522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,485,908
Number of Sequences: 27780
Number of extensions: 302039
Number of successful extensions: 604
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)