Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4123
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    28   1.7  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    28   1.7  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    28   1.7  

>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/69 (20%), Positives = 34/69 (49%)
 Frame = +3

Query: 324 LALVLRLKKKTNSEIGFYIVQSTTKTKIEYLLIIYTRLIYQFTVVFTDVPLYY*IHSIDL 503
           +A V R    +  ++   I +     ++ + L++Y  ++Y +      +PLY+ +  +  
Sbjct: 190 IAQVHRAVLPSGEKVAVKIQKPDVAKQMSWDLLVYKYMMYVYDKWIFHIPLYFTVDYVSE 249

Query: 504 KLRIDVENT 530
           +LR +V+ T
Sbjct: 250 RLRSEVDFT 258


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 212 KCTMLIYFLNQ*IPIFKNKIIKSCC 138
           KCT  +YF N   PI+  +I+ + C
Sbjct: 784 KCTAAVYFANSTEPIYPKRILSANC 808


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 371 FLYSTVNNKNEN*I-PTYNLYQTNISIYSGFYGCSIILLNSFN*LETSYRCRKYMYLMDR 547
           +LY+   +K E  I PT+++       Y  F G  +I  N      T   C  Y++  D 
Sbjct: 250 YLYANACSKGEQLIVPTWDM------AYEKF-GFMLIFWNMAGVPFTYSHCTLYLFSHDP 302

Query: 548 LIYEWWTPYTS 580
            +Y W T YT+
Sbjct: 303 SVYNWSTQYTT 313


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,016
Number of Sequences: 5004
Number of extensions: 52617
Number of successful extensions: 92
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)