Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4119
         (588 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0187 - 18878500-18879224,18879971-18880043                       28   4.8  
09_04_0660 - 19286653-19287271,19287791-19287916,19288016-192882...    27   8.4  

>05_04_0187 - 18878500-18879224,18879971-18880043
          Length = 265

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 110 ALARPPVLVKLERPPGHQCSLVHEKKKKKHPRLVL 6
           A A+PPV + L  PP   C    +  K   P+LV+
Sbjct: 50  AAAQPPVPLALAAPPSRPCLRPDDHAKVAKPKLVI 84


>09_04_0660 -
           19286653-19287271,19287791-19287916,19288016-19288221,
           19288417-19288549,19288632-19288713,19288906-19289035,
           19289187-19289279,19289391-19289510,19289594-19289660,
           19290079-19290137,19290719-19290943
          Length = 619

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 105 CSPTCPGETGKASGPPV 55
           C+ TCPG +G  SGP +
Sbjct: 95  CASTCPGPSGSDSGPVI 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,310
Number of Sequences: 37544
Number of extensions: 327715
Number of successful extensions: 627
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)