Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4118
(731 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 36 0.008
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 30 0.39
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 29 0.90
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 28 1.6
SPBC36.06c |spo9||farnesyl pyrophosphate synthetase|Schizosaccha... 27 2.8
SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|c... 27 2.8
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 3.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 3.6
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 4.8
SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha sub... 26 6.4
SPAC1782.03 |||microfibrillar-associated protein family protein|... 25 8.4
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma... 25 8.4
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 8.4
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.4
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 8.4
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 35.5 bits (78), Expect = 0.008
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +2
Query: 218 ILRSPITIVLPI-HVQQDDNNEIAGETDDIDNENIAVDSTLVEDSPADQNNPEPVED 385
+L I +LP Q+D +E E ++ D++ I T +ED ++N EPVE+
Sbjct: 701 VLSRAINTILPFSEASQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEE 757
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 29.9 bits (64), Expect = 0.39
Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = +2
Query: 278 EIAGETDDIDNENIAVDSTLVEDSPADQNNPEPVEDTPVSI-SSLSPVSTVTQATDVEPE 454
E A ETD+ID + I T + DS + + EP E+ I L V T+ EP
Sbjct: 94 EQARETDEIDFQLITSKVTKLIDSSEIEVDAEPKEENKKEIPEKLKNVKVDTENPSAEPY 153
Query: 455 QEVVGQV 475
+ G V
Sbjct: 154 TKAKGDV 160
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 28.7 bits (61), Expect = 0.90
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Frame = +2
Query: 191 WKQAFDPTPILRSPITI-----VLPIHVQQDDNNEIAGETDDIDNENIAVDSTLVEDSPA 355
W A D T R I + LP+ + +++ +EI D +++ VD + +SP+
Sbjct: 32 WNAADDGTNERREDIHVRFQDSALPLGIDENELDEIDINGDSKKLDSVEVDESHDVNSPS 91
Query: 356 DQNNPEPVEDTPVSISSLSPVSTVTQATDVEPEQEVVGQVIRFPCSCISG 505
D + + +++ S VS +T +T E + G+ + S + G
Sbjct: 92 DSRLKSSFKSV-LELTANSMVSVLTPSTKTEQTSKGKGKKKKAHVSFLEG 140
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 27.9 bits (59), Expect = 1.6
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +2
Query: 194 KQAFDPTPILRSPITIVLPIHVQQDDNNEIAGETDDIDNENIAVDSTLVEDSPADQN 364
K+A P L S +T V+ E DDI + NI+ D + P D N
Sbjct: 340 KKAIAPLS-LSSSVTAVISNRTSDKKTRSTVAEEDDITHLNISPDRLYLNKKPEDLN 395
>SPBC36.06c |spo9||farnesyl pyrophosphate
synthetase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 351
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 301 VVCFTSNFIIVILLNVYR*HYSYRTSENWCGIESLF 194
+VC+ F LN+ R HY SEN I+ L+
Sbjct: 266 LVCYAEKFASADQLNLLRAHYGKAGSENIAVIKQLY 301
>SPAP27G11.09c |||GTP cyclohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 326
Score = 27.1 bits (57), Expect = 2.8
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = +2
Query: 296 DDIDNENIAVDSTLVEDSPADQNNPE----PVEDTP-VSISSLSPVSTVTQATDVEPEQE 460
D + + + D TL++D +N P++D V+ LSP A D+EP+
Sbjct: 2 DKKEGDQVHHDKTLLQDLSLPENVASEKRLPIDDVQCVNSPMLSP------ALDIEPKPN 55
Query: 461 VVGQVIRFP 487
VVG R P
Sbjct: 56 VVGTAERLP 64
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +2
Query: 248 PIHVQQD-DNNEIAGETDDIDNENIAVDSTLVEDSPADQNNPEPVEDTPVSISSLSPVST 424
P V++D +++ GETD D N + E+SP+ + PE ++ P + + +
Sbjct: 397 PRPVKEDVPKSQVGGETDTTDVINNSTPKEETEESPSTE-LPETGKEQP---PNKAEPAV 452
Query: 425 VTQATDVEPEQEVVGQVIRF 484
T+A+ +P + RF
Sbjct: 453 PTEASSTKPSEAAEESTPRF 472
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +2
Query: 290 ETDDIDNENIAVDSTLVEDSPADQNNPEPVEDTPVSISSLSPVSTVTQATDVEPEQ 457
+T D+ N+ ++ T +E+ +NPE +++ S++ PV++ A+ + Q
Sbjct: 1684 KTRDLQNKITQLEET-IENLNKQLSNPEKTDESTSSVTETKPVTSKPTASKADVGQ 1738
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 4.8
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 1/84 (1%)
Frame = +2
Query: 173 KIPKIVWKQAFDPTPILRSPITIVLPIHVQQDDNNEIAGETDDIDNENIAVDSTLVEDSP 352
K+ I+ + P+ R ++ P+H ++ ++ D + DS L E +P
Sbjct: 246 KVQDIIDNEIPKPSESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTP 305
Query: 353 ADQNNPEPV-EDTPVSISSLSPVS 421
A + E + +T S+ P +
Sbjct: 306 AVEKVSENLGSETRESLQGAKPAA 329
>SPCC1620.09c |tfg1||transcription factor TFIIF complex alpha
subunit Tfg1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 6.4
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 278 EIAGETDDIDNENIAVDSTLVEDSPADQNNPEPVEDTPVSISSL---SPVSTVTQATDVE 448
E+ E +++ + S ++ + N P P+E TP S+S + S + + + +
Sbjct: 362 EVLQEEEELQKREEKLKSRFSANA-SKTNTPRPLERTPSSVSPVKASSQLQSPNTSIQIR 420
Query: 449 PEQEVVGQ 472
P+++++ +
Sbjct: 421 PQEQLINK 428
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.4 bits (53), Expect = 8.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 599 RRKQNLQVQMKYYHKSSF 546
++K ++Q KYYHK +F
Sbjct: 248 KKKSSMQFLQKYYHKGAF 265
>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 8.4
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +2
Query: 326 DSTLVEDSPADQNNPEPVEDTPVSISSLSPVSTVTQATDVEPEQEV--VGQVIRFPCSCI 499
D++ A+ +PE + ++ + + ++T+ Q T V+PE E +G + FP + +
Sbjct: 457 DTSTENQETAEVLDPEEIAAAELANITEAAIATLPQETVVQPEGEAPELGSPMGFPVTAL 516
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 260 QQDDNNEIAGETDDIDNENIAVDSTLVEDSPADQNNPEPVE 382
+Q D E DD+D +T++ED D + E E
Sbjct: 334 EQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEE 374
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/39 (25%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Frame = +2
Query: 260 QQDDNNEIAGETDDIDNENIAV---DSTLVEDSPADQNN 367
++DD ++ E +++DN + V D+ V+D D+++
Sbjct: 352 EEDDGEDLESEDEEVDNSDDIVEDGDNAFVDDEDDDKDS 390
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/41 (29%), Positives = 18/41 (43%)
Frame = +2
Query: 260 QQDDNNEIAGETDDIDNENIAVDSTLVEDSPADQNNPEPVE 382
+Q D E DD+D +T++ED D + E E
Sbjct: 334 EQQDKGENKKRQDDVDQATDNNTNTILEDDEKDNDEEEEEE 374
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +2
Query: 338 VEDSPADQNNPEPVEDTPVSISSLSPVSTVTQATDV 445
++ + AD++N E P+++ + SPV+ +T+ V
Sbjct: 154 IDITMADESNVEKDPARPIAVYNSSPVTEITEIKQV 189
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,068
Number of Sequences: 5004
Number of extensions: 57895
Number of successful extensions: 207
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -