Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4118
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    26   0.32 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.0  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   6.8  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   6.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   6.8  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   6.8  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   6.8  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.0  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.0  

>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 398 LIQECLQQVLGYFDQQVNLQQGLSPQLYFHYQ 303
           ++ + LQQ  G  DQQ N+ +G +  LY H Q
Sbjct: 252 IVGKYLQQQAGQQDQQANIGRG-AQYLYLHQQ 282


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 335 LVEDSPADQNNPEPVEDTPVSISSL 409
           LVE  P   + P PV  TP ++  L
Sbjct: 146 LVESFPRGGSLPTPVTPTPTTVQQL 170


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -1

Query: 323 QLYFHYQCRLFHQQFHYCHLVER 255
           Q Y  +Q     ++FHY H + R
Sbjct: 13  QTYTRFQTLELEKEFHYNHYLTR 35


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = +2

Query: 53  TNVFKIMYFRLFILILFIKAYQCDIEFDKDKEKDYNEIKFKIPKIVWKQAFDPTPILRSP 232
           T    ++ F L +  L +   + D       E  + EIK ++   + K  ++P  +   P
Sbjct: 60  TREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVP 119

Query: 233 IT 238
           I+
Sbjct: 120 IS 121


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 682 SWIKTNRWRIT 650
           SW K + WRIT
Sbjct: 203 SWAKNDSWRIT 213


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = +2

Query: 53  TNVFKIMYFRLFILILFIKAYQCDIEFDKDKEKDYNEIKFKIPKIVWKQAFDPTPILRSP 232
           T    ++ F L +  L +   + D       E  + EIK ++   + K  ++P  +   P
Sbjct: 76  TREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVP 135

Query: 233 IT 238
           I+
Sbjct: 136 IS 137


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/62 (20%), Positives = 26/62 (41%)
 Frame = +2

Query: 53  TNVFKIMYFRLFILILFIKAYQCDIEFDKDKEKDYNEIKFKIPKIVWKQAFDPTPILRSP 232
           T    ++ F L +  L +   + D       E  + EIK ++   + K  ++P  +   P
Sbjct: 133 TREHALLAFTLGVKQLIVGVNKMDSTEPPYSETRFEEIKKEVSSYIKKIGYNPAAVAFVP 192

Query: 233 IT 238
           I+
Sbjct: 193 IS 194


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 644 IHGVEPLYYY*HSVLRRKQNLQV 576
           I+ + P Y++  SV+   QNL++
Sbjct: 162 IYEIYPNYFFDSSVIEEAQNLKM 184


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 644 IHGVEPLYYY*HSVLRRKQNLQV 576
           I+ + P Y++  SV+   QNL++
Sbjct: 162 IYEIYPNYFFDSSVIEEAQNLKM 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,476
Number of Sequences: 438
Number of extensions: 4084
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)