Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4117
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 186 1e-47
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 101 5e-22
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 101 5e-22
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 100 6e-22
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 100 6e-22
AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin co... 83 2e-16
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 77 1e-14
U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin conju... 73 1e-13
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 72 3e-13
AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin co... 67 9e-12
U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin conju... 65 4e-11
AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical ... 63 1e-10
U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin conju... 58 4e-09
AF106565-1|AAC97374.1| 166|Caenorhabditis elegans ubiquitin-con... 58 4e-09
AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin con... 55 3e-08
AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin con... 54 9e-08
AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin con... 53 1e-07
U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin conju... 49 2e-06
U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin conju... 46 2e-05
Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical pr... 45 4e-05
U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin conju... 41 5e-04
U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2 (c... 41 7e-04
Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical pr... 39 0.002
Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical pr... 31 0.57
Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical pr... 29 2.3
AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical ... 27 9.3
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 186 bits (453), Expect = 1e-47
Identities = 86/116 (74%), Positives = 97/116 (83%)
Frame = +3
Query: 177 LPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYP 356
LPRRIIKETQRL+ +PVPGISA P E+NARYFHV++ GP+DS +YP
Sbjct: 5 LPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 64
Query: 357 MSAPKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 524
M+APKVRF+TKIYHPNID+LGRICLDILKDKWSPALQIRTVLLSIQALLSAPNP+D
Sbjct: 65 MAAPKVRFMTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPED 120
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 101 bits (241), Expect = 5e-22
Identities = 42/125 (33%), Positives = 73/125 (58%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 363 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDSAGERR 542
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ A
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 543 CRIVE 557
++ +
Sbjct: 127 AQLYQ 131
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 101 bits (241), Expect = 5e-22
Identities = 42/125 (33%), Positives = 73/125 (58%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
RR++++ ++L ++P G+S P+E N + I+ GP+++ +YP
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 363 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDSAGERR 542
P V+FI+K++HPN+ G ICLDIL+++WSP + +L SIQ+LL PNP+ A
Sbjct: 67 PPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLA 126
Query: 543 CRIVE 557
++ +
Sbjct: 127 AQLYQ 131
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 100 bits (240), Expect = 6e-22
Identities = 52/114 (45%), Positives = 65/114 (57%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 363 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 524
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDD
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 100 bits (240), Expect = 6e-22
Identities = 52/114 (45%), Positives = 65/114 (57%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
+RI KE Q L ++P SA P + ++ + GP +S DYP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 63
Query: 363 APKVRFITKIYHPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDD 524
PKV F T+IYHPNI+ G ICLDIL+ +WSPAL I VLLSI +LL PNPDD
Sbjct: 64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDD 117
>AF099919-11|AAC68796.1| 199|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein20 protein.
Length = 199
Score = 82.6 bits (195), Expect = 2e-16
Identities = 39/82 (47%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +3
Query: 282 VTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNID-RLGRICLDILKDKWSP 458
+ GP D+ YP S P V+F TKI+HPN+ + G ICLDILKD+W+
Sbjct: 43 IRGPPDTPYAGGMFDLDIKIPDQYPFSPPNVKFSTKIWHPNVSSQTGVICLDILKDQWAA 102
Query: 459 ALQIRTVLLSIQALLSAPNPDD 524
+L +RTVLLSIQAL+ P P D
Sbjct: 103 SLTLRTVLLSIQALMCTPEPKD 124
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 76.6 bits (180), Expect = 1e-14
Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 359
+R++ E + L P GI A P E N + ++TGPE++ DYP+
Sbjct: 7 KRLMTEYKELTTRPPEGIIAAPIDEDNFFEWECLITGPEETCFANGVFPARITFPQDYPL 66
Query: 360 SAPKVRFITKIYHPNIDRLGRICLDIL-------------KDKWSPALQIRTVLLSIQAL 500
S PK+RF I+HPNI GR+C+ IL ++WSP I +LLS+ ++
Sbjct: 67 SPPKMRFTCGIFHPNIYADGRVCISILHAPGDDPTGYELSNERWSPVQSIEKILLSVVSM 126
Query: 501 LSAPNPDDSA 530
L+ PN + A
Sbjct: 127 LAEPNDESPA 136
>U39674-5|AAA80415.2| 229|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein21 protein.
Length = 229
Score = 73.3 bits (172), Expect = 1e-13
Identities = 49/141 (34%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Frame = +3
Query: 153 DRIFKMA-ALPRRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXX 329
D++ +A A R KE GI E N + GPE +
Sbjct: 13 DKMSNLALARVTRKCKEVANASDITEAGIHVEIKENNLMDIKGFIKGPEGTPYAGGTFEI 72
Query: 330 XXXXXXDYPMSAPKV---------------RFITKIYHPNID-RLGRICLDILKDKWSPA 461
YP PKV +F+T+I+HPNI + G ICLDILKDKW+ +
Sbjct: 73 KVDIPEHYPFEPPKVTEIIFHIRAFEYIQAKFVTRIWHPNISSQTGTICLDILKDKWTAS 132
Query: 462 LQIRTVLLSIQALLSAPNPDD 524
L +RTVLLS+QA+L +P P D
Sbjct: 133 LTLRTVLLSLQAMLCSPEPSD 153
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 71.7 bits (168), Expect = 3e-13
Identities = 41/126 (32%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Frame = +3
Query: 195 KETQRLMQEPVPGISAVPSETNARY-FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPK 371
K+ + + PV G SA + N Y + V+V GP D+ DYP PK
Sbjct: 10 KQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPK 69
Query: 372 VRFITKIYHPNIDRLGRICLDILKD-------------KWSPALQIRTVLLSIQALLSAP 512
++FI++I+HPNID+ G +C+ IL D +W P + T+LLS+ ++L+ P
Sbjct: 70 MKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDP 129
Query: 513 NPDDSA 530
N + A
Sbjct: 130 NFESPA 135
>AC025726-12|AAK73914.3| 243|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein3 protein.
Length = 243
Score = 66.9 bits (156), Expect = 9e-12
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
R + E + L +PV G + +E N + V + GP + +YP S
Sbjct: 13 RALTMELKNLQSQPVEGFTIDVNEDNLFVWTVGIYGPPKTLYQGGYFKASIRFPSNYPYS 72
Query: 363 APKVRFITKIYHPNIDRLGRICLDILK-------------DKWSPALQIRTVLLSIQALL 503
P ++F TK++HPN+ G +C+ IL ++W+P +RT+LLS+ +LL
Sbjct: 73 PPSMKFTTKVWHPNVYENGDLCISILHSPIDDPQSGELACERWNPTQSVRTILLSVISLL 132
Query: 504 SAPNPDDSA 530
+ PN A
Sbjct: 133 NEPNTSSPA 141
>U00035-7|AAA50648.2| 153|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein18 protein.
Length = 153
Score = 64.9 bits (151), Expect = 4e-11
Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 2/114 (1%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVP-SETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPM 359
RR+ KE L V V ETN + V++ P+ DYP
Sbjct: 5 RRLQKELGDLKNCGVKAYENVECEETNLLKWTVLLI-PDKEPYNKGAFKVGITFPVDYPF 63
Query: 360 SAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNP 518
PKV F TKIYHPN+D G+ CL I+ + W PA + V++++ +L++ P P
Sbjct: 64 KPPKVAFETKIYHPNVDEEGKFCLPIVTAENWKPATKTEQVMMALLSLINEPEP 117
>AL032653-6|CAA21716.1| 152|Caenorhabditis elegans Hypothetical
protein Y54E5B.4 protein.
Length = 152
Score = 63.3 bits (147), Expect = 1e-10
Identities = 37/116 (31%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Frame = +3
Query: 174 ALPRRIIKETQRLMQEPVPGISAVPSETN--ARYFHVIVTGPEDSXXXXXXXXXXXXXXX 347
A RR++KE +L E G+ + T+ + + + V G E +
Sbjct: 4 AATRRLMKELAQLKSEAPEGLLVDNTSTSNDLKQWKIGVVGAEGTLYAGEVFMLQFTFGP 63
Query: 348 DYPMSAPKVRFITKIY--HPNIDRLGRICLDILKDKWSPALQIRTVLLSIQALLSA 509
YP ++P+V F+ + HP+I G ICL IL D W+PAL +++V LSI ++LS+
Sbjct: 64 QYPFNSPEVMFVGETIPAHPHIYSNGHICLSILSDDWTPALSVQSVCLSILSMLSS 119
>U70849-3|AAK67232.1| 166|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein9 protein.
Length = 166
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 348 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 521
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 522 DSA 530
D A
Sbjct: 127 DPA 129
>AF106565-1|AAC97374.1| 166|Caenorhabditis elegans
ubiquitin-conjugating enzyme 9homolog protein.
Length = 166
Score = 58.0 bits (134), Expect = 4e-09
Identities = 24/63 (38%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 348 DYPMSAPKVRFITKIYHPNIDRLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPNPD 521
D+P + PK +F ++HPN+ G +CL +L + W P++ I+ +L+ IQ LL+ PN +
Sbjct: 67 DFPSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIE 126
Query: 522 DSA 530
D A
Sbjct: 127 DPA 129
>AC024748-1|AAF60411.2| 218|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein15 protein.
Length = 218
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
RR+ K+ +LMQ+PV GI A+P+E N +H + G D+ ++P S
Sbjct: 22 RRLQKDYAKLMQDPVDGIKALPNEDNILEWHYCLRGSPDTPFYGGYYWGKVIFKENFPWS 81
Query: 363 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 518
P + IT + R+CL D + W+P + +L+ + + ++ +P
Sbjct: 82 PPAITMITP--NGRFQTNTRLCLSISDYHPESWNPGWTVSAILIGLHSFMNENSP 134
>AC024876-5|AAF60891.2| 221|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein8 protein.
Length = 221
Score = 53.6 bits (123), Expect = 9e-08
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 2/96 (2%)
Frame = +3
Query: 270 FHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRL-GRICLDILKD 446
F V GP+D+ YP +P + F+ KI+HPNID G +CLD++
Sbjct: 35 FIVRFHGPKDTAYENGVWRIRVDMPDKYPFKSPSIGFLNKIFHPNIDEASGTVCLDVINQ 94
Query: 447 KWSPALQIRTVL-LSIQALLSAPNPDDSAGERRCRI 551
W+ + + + LL+ PN D R+
Sbjct: 95 AWTALYDLTNIFDTFLPQLLTYPNAADPLNGEAARL 130
>AC024747-1|AAO21404.1| 203|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein26 protein.
Length = 203
Score = 53.2 bits (122), Expect = 1e-07
Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
+R+ K+ QRL++EPVP + A P ETN + I+ G + D+P
Sbjct: 11 QRLKKDYQRLLKEPVPFMKAAPLETNILEWRYIIIGAPKTPYEGGIYMGKLLFPKDFPFK 70
Query: 363 APKVRFITKIYHPNIDRLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 518
P + +T + R+CL D D W+PA + T++ + + ++ P
Sbjct: 71 PPAILMLTP--NGRFQTNTRLCLSISDYHPDTWNPAWTVSTIITGLMSFMNDNQP 123
>U41026-5|AAA82352.2| 546|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein23 protein.
Length = 546
Score = 49.2 bits (112), Expect = 2e-06
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Frame = +3
Query: 180 PRRIIKET-QRLMQEP-VPGISAVPSETNA-RYFHVIVTGPEDSXXXXXXXXXXXXXXXD 350
P ++I T Q L +EP V + V + + I+ G E++
Sbjct: 348 PMKVISVTPQNLPEEPNVSETNIVTVKFRLPKGIQGIIKGVEETPYEGGIFELDIKIGES 407
Query: 351 YPMSAPKVRFITKIYHPNIDRL-GRICL-DILKDKWSPALQIRTVLLSIQALLS 506
YP AP V+FITKI+HP++ G ICL D+ W ++ I VL+ IQ+ +S
Sbjct: 408 YPFKAPTVKFITKIWHPSVSPFDGTICLHDVDNGVWPVSMTIYKVLIVIQSWMS 461
>U40411-1|AAC47063.2| 679|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein17 protein.
Length = 679
Score = 45.6 bits (103), Expect = 2e-05
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 12/88 (13%)
Frame = +3
Query: 276 VIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITK-----IYHPNIDRLGRICLDIL 440
V+++GP+D+ YP S PK F+T ++PN+ G+ICL IL
Sbjct: 447 VLISGPDDTPYANGLFEFDIFFPTGYPFSPPKCAFLTTGSGNVRFNPNLYNDGKICLSIL 506
Query: 441 -------KDKWSPALQIRTVLLSIQALL 503
++KW+P + VL+SIQ ++
Sbjct: 507 GTWEGRPEEKWNPYCSLMQVLVSIQEVI 534
>Z66520-3|CAA91389.2| 160|Caenorhabditis elegans Hypothetical
protein F49E12.4 protein.
Length = 160
Score = 44.8 bits (101), Expect = 4e-05
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 348 DYPMSAPKVRFITKIYHPNIDRLG-RICLD-ILKDKWSPALQIRTVLLSIQALLSAPN 515
+YP P ++F +YHPN+D + +C +L++ W P + VLL++ LL+ P+
Sbjct: 71 EYPFKPPYLKFCHNVYHPNVDPVTCELCSPMLLQENWKPETTMEDVLLNLIVLLNEPD 128
>U23517-9|AAB93334.2| 314|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein6 protein.
Length = 314
Score = 41.1 bits (92), Expect = 5e-04
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 3/110 (2%)
Frame = +3
Query: 183 RRIIKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMS 362
RR++KE L Q P A P E N +H + G + DYPM
Sbjct: 13 RRLMKEAMELRQ-PTEMYHAQPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYPMK 71
Query: 363 APKVRFITKIYHPNIDRLGRICLDIL---KDKWSPALQIRTVLLSIQALL 503
P + +T +++ ++CL I + W P+ IRT LL++ L
Sbjct: 72 PPNLILLTPNGRFELNK--KVCLSISGYHPETWLPSWSIRTALLALIGFL 119
>U13644-3|AAB52677.1| 230|Caenorhabditis elegans Ubiquitin e2
(conjugating enzyme)variant protein 2 protein.
Length = 230
Score = 40.7 bits (91), Expect = 7e-04
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 351 YPMSAPKVRFITKIYHPNIDRLGRICLDIL-KDKWSPALQIRTVLLSIQALLSAPNPDDS 527
+P+ P F T ++HPN+D G I L +L ++ WS ++ +L I LL+ P+ +
Sbjct: 97 WPIIPPICEFKTPLHHPNVDLRGSIYLKMLEQEHWSSETSLKKLLREISNLLATPDLTQA 156
Query: 528 A 530
A
Sbjct: 157 A 157
>Z81108-2|CAB03238.1| 180|Caenorhabditis elegans Hypothetical
protein R09B3.4 protein.
Length = 180
Score = 39.1 bits (87), Expect = 0.002
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 6/94 (6%)
Frame = +3
Query: 243 VPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSAPKVRFITKIYHPNIDRLGR 422
VPS + + VT P++ +Y P V+ +TK++HPNI+ G
Sbjct: 52 VPSTSCLHELELTVT-PQEGIYRGGKFRFKITVPPEYNNVPPVVKCLTKVWHPNINEDGS 110
Query: 423 ICLDILKDK------WSPALQIRTVLLSIQALLS 506
ICL IL+ W P + V+ + +L +
Sbjct: 111 ICLSILRQNSLDQYGWRPTRNLTDVVHGLVSLFN 144
>Z81516-5|CAB04202.1| 219|Caenorhabditis elegans Hypothetical
protein F26H9.7 protein.
Length = 219
Score = 31.1 bits (67), Expect = 0.57
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Frame = +3
Query: 192 IKETQRLMQEPVPGISAVPSETNARYFHVIVTGPEDSXXXXXXXXXXXXXXXDYPMSA-P 368
+ ++ L + V G ET FHVI+ GP S S P
Sbjct: 38 MNRSRHLQGKKVNGCIMRIDETKQLLFHVIIDGPVGSIYEGGTFFADINIQPYQNHSLIP 97
Query: 369 KVRFITKIYHPNIDRLG 419
+V F T I+HPN+ + G
Sbjct: 98 RVCFHTFIFHPNLGKYG 114
>Z92834-2|CAB07383.1| 139|Caenorhabditis elegans Hypothetical
protein F39B2.2 protein.
Length = 139
Score = 29.1 bits (62), Expect = 2.3
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Frame = +3
Query: 348 DYPMSAPKVRFITKIYHPNIDRLGRIC----LDILKDKWSPALQIRTVLLSIQ 494
+YP P VRF TK++ +++ + L L++ WS + I+TVL I+
Sbjct: 67 NYPREPPTVRFTTKVHMVGVNQSNGVIDKRNLTTLRN-WSNSYMIKTVLEDIR 118
>AF003137-9|AAB93646.3| 883|Caenorhabditis elegans Hypothetical
protein C27A12.9 protein.
Length = 883
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 82 FSANIIRYFIQLYE*SLPFDKLRSTAYLKWQPY 180
+ A ++RYF+Q + +KLRSTA +P+
Sbjct: 500 YEAQVVRYFLQSLVTLVFLEKLRSTALRPRKPF 532
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,665
Number of Sequences: 27780
Number of extensions: 239684
Number of successful extensions: 516
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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