Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4115
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein...    58   1e-09
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      54   2e-08
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    46   4e-06
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    37   0.003
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    29   0.51 
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    27   2.7  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    26   6.3  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    26   6.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   8.3  
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    25   8.3  

>SPAC4F8.10c |stg1||SM22/transgelin-like actin modulating protein
           Stg1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score = 58.0 bits (134), Expect = 1e-09
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
 Frame = +2

Query: 194 SEELAHESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTSSMA 373
           + +L  E+ EWI        N   D+    + L+ G +LC++        I+    S+M 
Sbjct: 2   TSQLEKEAREWIEETLHTKLNAQLDL---LDQLQSGVILCRICKEALGANIR-YKESNMP 57

Query: 374 FKCMENINAFLEAARQL-GVPAQETFQTVDLWERQNLNSVVICLQSLGRKA 523
           F  MENI+AF+  A+Q+  VP+Q+ FQT DL+ER+N   V+  + S  R A
Sbjct: 58  FVQMENISAFINYAQQVVHVPSQDMFQTSDLFERRNDEQVLRSIHSFSRYA 108



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 504 SHWVERLEPTGKPSIGPKEAEKNVRNFSEEQLR 602
           S +  ++ P     +GPK AEK  R FS +Q R
Sbjct: 105 SRYAAKMFPGKVRGLGPKLAEKKPRVFSAQQQR 137


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 54.0 bits (124), Expect = 2e-08
 Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +2

Query: 212 ESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPN-MIKKINTSSMAFKCME 388
           E+ +WI    G      G    F + L++G +L  L     P+ +IK   ++ + F+  +
Sbjct: 46  EAKKWIEECLG---TDLGPTSTFEQSLRNGVVLALLVQKFQPDKLIKIFYSNELQFRHSD 102

Query: 389 NINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 511
           NIN FL+    +G+P    F+  D++E +NL  V+ C+ +L
Sbjct: 103 NINKFLDFIHGIGLPEIFHFELTDIYEGKNLPKVIYCIHAL 143


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 46.4 bits (105), Expect = 4e-06
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 1/102 (0%)
 Frame = +2

Query: 209 HESLEWIRMITGEPENTSGDMDNFYEVLKDGTLLCKLANNIHPNMIKKINTS-SMAFKCM 385
           HE+ +W+     E  N   ++D+F + L +G +LC+LA   +P +         ++ +  
Sbjct: 68  HEAKKWLEE---ETNNEYQNLDDFVDALVNGKVLCQLAFKYYPKLASNWKPRYQISERNT 124

Query: 386 ENINAFLEAARQLGVPAQETFQTVDLWERQNLNSVVICLQSL 511
             +NAF      +G+     F+T DL  R N+  V+ CL +L
Sbjct: 125 VYLNAFFHFLDFIGMFTPFRFETKDLVRRFNIPKVIYCLHAL 166


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 13/115 (11%)
 Frame = +2

Query: 122 DMANNRATKSGFAAEAQRKINSKYSEELAHESLEWIR-MITGEPENTSGDMDN-----FY 283
           ++   R T  G ++     IN    EE   E ++ I  ++ G+P+  S    N     F+
Sbjct: 91  EVKKGRITIKGSSSSVSHTIN----EEERREFIKHINSVLAGDPDVGSRVPINTETFEFF 146

Query: 284 EVLKDGTLLCKLANNIHPNMI------KKINTSSMA-FKCMENINAFLEAARQLG 427
           +  KDG +L KL N+  P+ I      K+ N   +  FKC+EN N  + +A+ +G
Sbjct: 147 DQCKDGLILSKLINDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKAMG 201



 Score = 30.3 bits (65), Expect = 0.29
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)
 Frame = +2

Query: 275 NFYEVLKDGTLLCKLANNIHPNMI--KKINTS------SMAFKCMENINAFLEAARQLG 427
           +F+  L+DG +L +  + I PN +  KK+N +       M FK +EN N  ++  +  G
Sbjct: 406 DFFNNLRDGLILLQAYDKITPNTVNWKKVNKAPASGDEMMRFKAVENCNYAVDLGKNQG 464


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 403 PRSRKTVGCTGAGNFSNCRPVGETESQLRRDLLAVTG*KGWNLRESRQ 546
           P+ +  V CTGAG+      V   +S    D L +TG  G  L+ S++
Sbjct: 119 PKFKNIVDCTGAGDVDTSVEVAAADS---NDYLTITGRSGRTLKLSKE 163


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 347 KKINTSSMAFKCMENINAFLEAARQLGVPAQETFQTVDLWE 469
           ++  +S  A    E + AF+E A+Q G+P  E       W+
Sbjct: 118 RRFRSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWD 158


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 40  CLHSVHSDFTFYRVCDLFK*FIKLLLVRH 126
           CLHSV   FT   V  L++ F++L  + H
Sbjct: 244 CLHSVPDAFTNPDVATLYQKFLRLQSLEH 272


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 522 LEPTGKPSIGPKEAEKNVRNFSEEQLRAGQGSHIS 626
           +EP   P++  KE  KN RNF        Q S++S
Sbjct: 51  IEPKFSPALSIKEDGKNDRNFEALMSLQAQDSNLS 85


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 550  DRKKLRRTCETSPRSSSGLVRGVISLQYGSNKGANQSGINFGN 678
            + KKL+RT E+S R  + L RG+      S   +     N+ N
Sbjct: 1188 ENKKLKRTVESSNRVIADLQRGITEKDVSSTSESVGERSNYLN 1230


>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 104 LNCY*FDMANNRATKSGFAAEAQ 172
           LN Y +D  NN   K+GFA  A+
Sbjct: 171 LNDYFYDTVNNGVYKTGFATTAE 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,340
Number of Sequences: 5004
Number of extensions: 69777
Number of successful extensions: 206
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)