Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4113
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    38   0.001
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   2.9  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    27   3.9  
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb...    26   5.1  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    26   6.8  

>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +3

Query: 228 IRNRVTLSLSLLFGAKVMNVTVPFLFKYAVDEVNQVATTPAG 353
           ++ RV  +L+LL  AK++NV VPF FK  +D +N       G
Sbjct: 115 LKVRVVSALALLVAAKILNVQVPFYFKSIIDTMNTTLVQEVG 156


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 380 YSGHAEQRVSGRCRRHLVHFIHSIF 306
           +S   +QR +GR    +VHFI S+F
Sbjct: 586 FSTEEQQRTTGRLTVAIVHFIFSVF 610


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 418 TNKLKAVVPNACGTVAMPSSASPAGVVATWFTSSTAYLKRNGTVT 284
           T+ +  V+P++  + A P SAS +   +T + SST       T +
Sbjct: 214 TSSVSTVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTS 258


>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +2

Query: 536 EAFPVSTMDNYYIIQFRFSTSHPSVSGLYKIIKTCLLEKTQLLTPS 673
           E F  +    Y IIQ + ST +   +GL +I+   + ++  LLT S
Sbjct: 228 ECFKETKNAAYDIIQRKGSTEYGVAAGLVRILAAIIRDENALLTVS 273


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 541 VPSFNHGQLLHNTI*IFDVTPFSERLIQNY 630
           +P+   G + H ++    V+PFS+R+  NY
Sbjct: 20  IPALEEGSVYHVSLKSEGVSPFSDRIQLNY 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,216,081
Number of Sequences: 5004
Number of extensions: 68138
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)