Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4113
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0193 - 1491710-1491739,1492194-1492319,1492631-1492766,149...    49   5e-06
07_01_0974 + 8211602-8212051                                           31   1.0  
02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    28   7.1  

>06_01_0193 -
           1491710-1491739,1492194-1492319,1492631-1492766,
           1493048-1493112,1493213-1493305,1493433-1493498,
           1493763-1493843,1493977-1494032,1494692-1494780,
           1495340-1495425,1495531-1495647,1496109-1496254,
           1496665-1496725,1496831-1496914,1497028-1497135,
           1497286-1497388,1497802-1497845,1498100-1498584,
           1499417-1499603,1500150-1500362,1501066-1501323
          Length = 877

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
 Frame = +3

Query: 207 MLQDNQAIRNRVTLSLSLLFGAKVMNVTVPFLFKYAVD--------EVNQVATTPAGDAL 362
           +L D+   R R+ LSL LL GAKV+NV VPFLFK AVD        E +  + T A   L
Sbjct: 135 LLNDSPDFRFRLILSLGLLVGAKVINVQVPFLFKLAVDWLAALAGAETSLASFTEANATL 194

Query: 363 LGMATVPQAL 392
           L +   P A+
Sbjct: 195 LALFASPAAV 204


>07_01_0974 + 8211602-8212051
          Length = 149

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 421 PTNKLKAVVPNACGTVAMPSSASPAGV 341
           PTN     VP  CGT   P++ SP GV
Sbjct: 69  PTNPAPPAVPCNCGTTTAPAAPSPPGV 95


>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 123 SFFPNSNEYEISYLA*VHGVGRIHRLLKMLQDNQAIRNRVTLSLSLLFGAKVMNVTV 293
           SF P   E+E+       GV    R+L  +++    R  + + +  +FGAK+  + V
Sbjct: 269 SFVPPDGEFELMKYRITEGVNLPFRVLPTIKELGRTRMEINVKVKSVFGAKMFALGV 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,299,622
Number of Sequences: 37544
Number of extensions: 397467
Number of successful extensions: 956
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)