Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4113
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022972-5|AAC48237.1|  523|Caenorhabditis elegans Udp-glucurono...    29   3.6  
U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family...    28   8.4  

>AF022972-5|AAC48237.1|  523|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein38 protein.
          Length = 523

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 487 IVLHVQSNFNQLKSKNHILYLHPTNKLK 404
           I++    NFN  KS   ++Y+ P+ KLK
Sbjct: 54  IIVEKYRNFNYTKSTKDVVYMEPSKKLK 81


>U52002-2|AAB37728.1| 1544|Caenorhabditis elegans Cadherin family
            protein 5, isoforma protein.
          Length = 1544

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -1

Query: 478  HVQSNF-NQLKSKNHILYLHPTNKLKAVVPNACGTVAMPSSASPAGVVATWFTSSTAYLK 302
            H+ +N  N+L S    +++ P N + AV+           S +PAG V T  T + A  +
Sbjct: 1427 HLNNNSTNRLHSSLAQIFMQPINVMLAVLLALASFAQGGRSVAPAGAV-TEPTVTQAVPE 1485

Query: 301  RNGTVTFITFAPNRSDRDSVT 239
             +G  + +T  PN    D V+
Sbjct: 1486 GSGLSSDVTDRPNIDSTDVVS 1506


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,481,846
Number of Sequences: 27780
Number of extensions: 375531
Number of successful extensions: 745
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)