Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4112
(761 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 29 0.96
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.2
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 2.9
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 27 2.9
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 6.7
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 6.7
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 6.7
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 8.9
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 8.9
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 8.9
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 28.7 bits (61), Expect = 0.96
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 677 LTFKKGDILQISDRKDPNWWQAS 745
L+FKKGDI+ + + +WW+ S
Sbjct: 234 LSFKKGDIILVLESVYKDWWKGS 256
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -2
Query: 334 TTFTVSIGISPLPSGLSFENSIRSGNSFGINLSSIPDPLSNQILPIW 194
TT SI P PSGLS NS + +SF IP + Q+LPI+
Sbjct: 337 TTSIPSINNQPFPSGLSASNSNFASSSF------IPQSVP-QLLPIY 376
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 24 CADSEEDLLVKPVSLGNVNIIRSLSEY--RGNNIRTIEQAELAIIVSRAH 167
C D+E+++ V +S + + E RGN+ RT+ E + SR+H
Sbjct: 208 CEDAEQNVSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEANAVSSRSH 257
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 659 PGKEIGLTFKKGDILQISDRKDPNWW 736
P E L KKGD+L + D WW
Sbjct: 434 PETENELKLKKGDLLLVLKEIDEGWW 459
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 677 LTFKKGDILQISDRKDPNWWQ 739
L+F + +I+ D DPNWW+
Sbjct: 819 LSFFEDEIIANVDCVDPNWWE 839
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -1
Query: 362 RLSWYF-SKTYNFYCFYRHIAVTLGTL 285
R WY S + NF+ FY H+ +G +
Sbjct: 255 RFLWYSTSYSLNFHLFYHHLTTMMGQM 281
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 6.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Frame = +2
Query: 677 LTFKKGDILQISDRKDPNWWQASPV 751
L GD++Q+S++ P+W+ V
Sbjct: 298 LDLHTGDVIQVSEQLGPDWYMGEKV 322
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 174 ALIEAHDQ--IGKIWLERGSGIDDKLIPNEFPDLIEFSKESPE 296
AL E H+ IGKI + S + DK FP LI F + E
Sbjct: 66 ALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSE 108
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -2
Query: 289 LSFENSIRSGNSFGINLSSIPDPLSNQILPIWS*ASINALKCALDTMIASSACSIVRILF 110
L+ +N RS ++ + P S ++P++ ++ L C L + +AS C++V F
Sbjct: 181 LTHKNLCRSIHNITTSYRLDPRDTSYVVMPLFH---VHGLLCGLLSTLASGGCAVVPPKF 237
Query: 109 PRYS 98
+S
Sbjct: 238 SAHS 241
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Frame = +2
Query: 662 GKEIG-LTFKKGDILQISDR--KDPNWW 736
G++ G L+F+KGDI+ I +R +WW
Sbjct: 384 GEQPGDLSFQKGDIIDIVERSGSHDDWW 411
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,965
Number of Sequences: 5004
Number of extensions: 63944
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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