Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4111
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...   137   2e-33
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo...    64   2e-11
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...    44   1e-05
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...    29   0.59 
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    29   0.78 
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    27   1.8  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    27   3.2  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    27   3.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   4.2  
SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    26   5.5  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   7.3  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    25   9.7  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   9.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score =  137 bits (331), Expect = 2e-33
 Identities = 60/141 (42%), Positives = 98/141 (69%)
 Frame = +2

Query: 236 MMEWLFGHKMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAV 415
           +  WLFG   +P E LR +QR+L +A R+LDRER K++Q+E+ +I +IK  AK G   A 
Sbjct: 3   LTSWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAA 62

Query: 416 KIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQTLKSQSTMAQAMKGVTRAMATMNRQLNM 595
           +I A+DL+R R   +K M  K  +QA+SL++QT+++   M Q+M+G TR +  MN+ +N+
Sbjct: 63  RIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNI 122

Query: 596 PQIQKILQEFEKQSEIMDMKE 658
           P + +I Q+FE+++EIM+ ++
Sbjct: 123 PAMARITQQFERENEIMEQRQ 143


>SPAC9E9.14 |vps24||vacuolar sorting protein
           Vps24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 31/123 (25%), Positives = 65/123 (52%)
 Frame = +2

Query: 266 TPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRT 445
           TP E  RK Q  + K  R LDR+   ++   KK    +K+LAK+  +  ++I+AK++ R 
Sbjct: 12  TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARA 71

Query: 446 RRYVRKFMLMKANIQAVSLKIQTLKSQSTMAQAMKGVTRAMATMNRQLNMPQIQKILQEF 625
            R+ ++    KA + ++SL++    +   +   M+  T+ M  ++  + +PQ+ + ++  
Sbjct: 72  NRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETMRNL 131

Query: 626 EKQ 634
             +
Sbjct: 132 SME 134


>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 20/87 (22%), Positives = 47/87 (54%)
 Frame = +2

Query: 395 EGQMDAVKIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQTLKSQSTMAQAMKGVTRAMAT 574
           +G  +  +I A + +R ++     + + + I AVS ++QT  +   ++  M GV R M  
Sbjct: 20  KGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDR 79

Query: 575 MNRQLNMPQIQKILQEFEKQSEIMDMK 655
             + +N+  I +++ +FE Q + ++++
Sbjct: 80  AMKTMNLEMISQVMDKFEAQFDDVNVQ 106


>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 20/106 (18%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
 Frame = +2

Query: 341 KMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRTRRYVRKFMLMKA---NIQAVSLKIQ 511
           K E+  ++ IA+  ++A++      ++    L R + +  + + ++    NI+     IQ
Sbjct: 33  KKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQ 92

Query: 512 TLKSQSTMAQAMKGVTRAMATMNRQLNMPQIQKILQEFEKQSEIMD 649
                    QAM+    AM ++ R ++  ++ +I+ +   Q  I +
Sbjct: 93  NANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQTISE 138


>SPCC162.08c |nup211||nuclear pore complex associated
            protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 23/103 (22%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +2

Query: 341  KMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQ-TL 517
            + E  + K+IA  K   +      V+ ++ +L RT+  +R   L K+NIQ   L  + TL
Sbjct: 921  RQENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAELEKSNIQQKYLASEKTL 980

Query: 518  KSQSTMAQAMKGVTRAMATMNRQLNMPQIQKILQEFEKQSEIM 646
            +  +   +  K +  +  +  R+  +  ++  L +  K+ E++
Sbjct: 981  EMMNETHEQFKHLVESEIS-TREEKITSLRSELLDLNKRVEVL 1022


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 287 KNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQM 406
           K  R+L K +R +D  + ++   EK     +KK+  EG++
Sbjct: 524 KKIRSLCKKLRAIDDLKSRLNNNEKLEATQVKKIESEGKV 563


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +1

Query: 412 C*NHGKRLSTYQTICPQVHVNESEHPSGVTEDTNSQVS--EHHGAGDEGSHSC 564
           C +   R+   +T+C +V   E +  + +TED+N  ++  +    G+  +H C
Sbjct: 238 CKDGNVRIFKVETLCEEVFQEEEDAGNSMTEDSNFNLNSLKVELIGEYDNHKC 290


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +2

Query: 515 LKSQSTMAQAMKGVTRAMATMNRQLNMPQIQKILQEFEKQSEIMDMK 655
           L++ S  ++A    T ++   +    + +I + +QEFEK S  MD++
Sbjct: 122 LRNNSINSEAALSTTSSLLDDDFARRLEEIDRQVQEFEKSSSDMDVQ 168


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 32/128 (25%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
 Frame = +2

Query: 302  LNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRT-----RRYVRKF 466
            +N    +LD      + +  KV+AD++KL  E   D   I   DL +      + ++RK 
Sbjct: 1300 VNFKKMELDNRLTTTDAEFTKVVADLEKLQHE--HDDWLIQRGDLEKALKDSEKNFLRKE 1357

Query: 467  MLMKANIQAVSL-KIQTLKSQSTMAQAMKGVTRAMATMNRQLNMPQIQKILQE---FEKQ 634
              M  NI ++   K +T K  + ++  ++    A   +  QL+    +  L+E    EK+
Sbjct: 1358 AEMTENIHSLEEGKEETKKEIAELSSRLEDNQLATNKLKNQLDHLNQEIRLKEDVLKEKE 1417

Query: 635  SEIMDMKE 658
            S I+ ++E
Sbjct: 1418 SLIISLEE 1425


>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 418 NHGKRLSTYQTICPQVHVNESEHPSGVTED 507
           + GKR+ T + + P   V +S HP+  + D
Sbjct: 9   DEGKRVYTLKKVSPDGRVTKSSHPARFSPD 38


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +2

Query: 401 QMDAVKIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQTLKSQST 532
           Q+ A+  ++K+ V     VRK  L K+  + + +  QTL+ + T
Sbjct: 206 QLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFT 249


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +2

Query: 257 HKMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAVK 418
           HK+T  ++L +    +NK+ + L+ + ++    +K+  A  K+  +EG     K
Sbjct: 156 HKLTFQKLLGRGNSTINKSAQKLNNQPIEKSSVDKE-NAKRKRYVEEGTKQGQK 208


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
 Frame = +2

Query: 287 KNQRALNKAMRDLDRERMKME------QQEKKVIADIKKLAKEGQMDAVKIMAKDLVRTR 448
           + QRA  + +R  + ER+K E      +QEKK+    K  AK  +M  ++ + K+ +R +
Sbjct: 81  QKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAK--KMKELEKLEKERIRLQ 138

Query: 449 RYVRK 463
              R+
Sbjct: 139 EQQRR 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,067
Number of Sequences: 5004
Number of extensions: 48714
Number of successful extensions: 150
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)