Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4109
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   2.9  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   3.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   5.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   5.0  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.7  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    21   8.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.7  

>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -1

Query: 346 HTSVKNAKLNRVSNLTAREYRRKYSINTKLFKALKKTKQQ 227
           HTS + ++  R S    REYR+K     KL    +K  ++
Sbjct: 226 HTSSRYSRERRCSRDRNREYRKKDRQYEKLHNEKEKLLEE 265


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 460 KKIQFFLMCVFCNINFLITNLSF 528
           KK+Q +  C+  N N L  N  F
Sbjct: 57  KKVQLYCECILKNFNILDKNNVF 79


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 555 SRSFYFQLVVPCGIHCVVY 611
           S SFY   +V  GI+C +Y
Sbjct: 198 SISFYVPCIVMLGIYCRLY 216


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 232 VLFFLKP*IILYLLSISFGIR 294
           +LFFL P + + +L I  G+R
Sbjct: 211 ILFFLIPMVFIAVLYIRIGLR 231


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 696 PPDGEWLPLPMDFSNARG 643
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 346 HTSVKNAKLNRVSNLTAREYRRKYSINTKLFKALKKTKQQS*KH 215
           HTS + ++    S    REYR+K     KL    +K  ++   H
Sbjct: 226 HTSSRYSRERSCSRDRNREYRKKDRQYEKLHNEKEKFLEERTSH 269


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -1

Query: 142 IESIKRVENYPNERFL 95
           IESI    N PNE FL
Sbjct: 486 IESIDIAANAPNESFL 501


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +3

Query: 588 CGIHCVVYLVFR*AAAWLCPWHC 656
           C + C V    +  A   C WHC
Sbjct: 587 CSLPCEVGQAKKYVAGEQCCWHC 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,020
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 20
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)