Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4107
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    26   5.6  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.5  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   7.5  

>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 442 FNYNNSNIYKYVNFVPLFTKIARTDEYE 359
           FN NN NIY+ +N   L   I  T++Y+
Sbjct: 73  FNDNNENIYQLLNSTRLRDIIEGTEKYK 100


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 165 CLSILLFIYSVCSLSEICD 109
           C+ + LFIYS+  +SE+ +
Sbjct: 59  CIHVALFIYSIVQISELAE 77


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -2

Query: 220 YTLLFTVK-VCGQNENRLKLFVYIIIYL 140
           +T+LF V  +CG   NR  +F+Y +  L
Sbjct: 569 FTILFLVGLICGWRLNRFTMFIYYLCIL 596


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,141,295
Number of Sequences: 5004
Number of extensions: 60913
Number of successful extensions: 109
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)