Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4106
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    29   0.31 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   1.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   1.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   2.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   2.9  
SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|...    25   3.9  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    24   6.8  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    24   6.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    24   6.8  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    24   9.0  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.7 bits (61), Expect = 0.31
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = -3

Query: 193  ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGS--DTASANVWRRTLSPPTVTSSV 23
            +++ S T ++ S  +     P + S  + T +  GS  D+A+++ W    S   +TSSV
Sbjct: 883  SSLSSTTSLSTSIPVTSSVAPAVTSTGSETSSVVGSGTDSATSSSWTAETSSSAITSSV 941


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 175 TGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSS 26
           TG+TWST      +    +NL+A+K    S   SAN       PP   S+
Sbjct: 267 TGLTWSTKQDAVPLKTALANLSASKTQAPSSGDSANGGLPPPPPPPPPSN 316


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 110 GHEGKPGLRHGLGERL 63
           G EGKPG+  G+GE L
Sbjct: 72  GTEGKPGVSRGVGEEL 87


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
 Frame = -3

Query: 214 TGCTSP*ATMLSNTGVTW--STAIVLKAIPRIPS--NLAATKASPGSDTASANVWRRTLS 47
           T  TSP +T  S+T V+W  +T I   +  ++ S  ++  T  +  S T +++    T S
Sbjct: 602 TPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTSSTSISTSS 661

Query: 46  PPTVTSS 26
             T TSS
Sbjct: 662 SSTATSS 668


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 133 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSV 23
           PR+    A++K +  S TAS      ++SP +  SSV
Sbjct: 96  PRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSV 132


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = -3

Query: 214 TGCTSP*ATMLSNTGVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTV 35
           T  TS  +T L++   T ST++   A     S++  T +   +  +SAN    T +  T 
Sbjct: 381 TSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANSTTATSASSTP 440

Query: 34  TSSV 23
            SSV
Sbjct: 441 LSSV 444


>SPCC1672.05c |||tyrosine-tRNA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 401

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 62  PDVRRGRVGARACLRGR-QVRRDPRDGLQHYRSGPCDPGVRQHGG 193
           P +  G++ + A    +  +  DP+   +  RS  C+PGV +  G
Sbjct: 214 PSLAGGKMSSSAAANAKIDILDDPKTVNKKIRSAFCEPGVVEENG 258


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
 Frame = -2

Query: 218 EDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGH-EGK 96
           +D   E  +   V   GH +  + A    E   E+ GH EGK
Sbjct: 195 KDASSEEENKEFVSDEGHSIVTEDASADSESEEEVDGHSEGK 236


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +3

Query: 78  AVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNMVAQGLVQPVFSFYLN 233
           AV  P    +A     +LG  F+ +    +    D+++   L QPV   + N
Sbjct: 291 AVRAPNAIALALSITYVLGWVFNIVLAFTMGTDLDSLINSELGQPVAQIFYN 342


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 129 LGMAFSTIAVDHVTPVFDNMVAQGLVQPVFSFYLNR 236
           L M  S  +   + P F+ ++    +QP  +FYL+R
Sbjct: 883 LNMVCSPKSYYKLIPSFEQLIQDFHIQPQVAFYLSR 918


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 97  SPGSDTASANVWRRTLSPPTVTSSVER 17
           SP SDT S N+    LSP +   S  R
Sbjct: 143 SPASDTHSQNIHDEALSPSSFRVSRSR 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,296,133
Number of Sequences: 5004
Number of extensions: 21066
Number of successful extensions: 71
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)