Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4106
(375 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical pr... 107 3e-24
AF077544-5|AAK39240.1| 398|Caenorhabditis elegans Aspartyl prot... 79 1e-15
Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical pr... 72 1e-13
AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical ... 72 1e-13
AL132948-20|CAD31821.1| 391|Caenorhabditis elegans Hypothetical... 69 1e-12
AL132948-19|CAD31820.1| 395|Caenorhabditis elegans Hypothetical... 64 3e-11
AF045640-8|AAC02571.1| 394|Caenorhabditis elegans Hypothetical ... 62 9e-11
AJ009861-1|CAA08899.1| 395|Caenorhabditis elegans aspartic prot... 62 1e-10
U41746-3|AAO25990.1| 429|Caenorhabditis elegans Aspartyl protea... 61 2e-10
U41746-2|AAO25989.1| 635|Caenorhabditis elegans Aspartyl protea... 61 2e-10
AL132948-17|CAC51056.1| 396|Caenorhabditis elegans Hypothetical... 61 2e-10
AF210248-1|AAF19445.1| 396|Caenorhabditis elegans aspartic prot... 61 2e-10
AF208526-1|AAF19442.1| 396|Caenorhabditis elegans aspartic prot... 61 2e-10
AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical... 59 9e-10
U97000-5|AAC47991.1| 393|Caenorhabditis elegans Aspartyl protea... 50 7e-07
AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical ... 50 7e-07
Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical pr... 49 9e-07
U34889-1|AAB06576.1| 388|Caenorhabditis elegans aspartic protea... 48 2e-06
U97000-3|AAC47996.1| 389|Caenorhabditis elegans Aspartyl protea... 46 9e-06
AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical ... 44 5e-05
U64851-4|AAC47989.1| 389|Caenorhabditis elegans Hypothetical pr... 43 6e-05
U97000-4|AAC47994.1| 395|Caenorhabditis elegans Hypothetical pr... 43 8e-05
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 29 0.82
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 28 2.5
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 28 2.5
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 28 2.5
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 28 2.5
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 28 2.5
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 28 2.5
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 28 2.5
Z77663-17|CAB54256.5| 500|Caenorhabditis elegans Hypothetical p... 27 5.8
U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine rece... 27 5.8
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 5.8
AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical ... 27 5.8
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 5.8
Z29116-1|CAA82367.2| 331|Caenorhabditis elegans Hypothetical pr... 26 7.6
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 26 7.6
AL117204-25|CAB55139.2| 528|Caenorhabditis elegans Hypothetical... 26 7.6
>Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical
protein R12H7.2 protein.
Length = 444
Score = 107 bits (257), Expect = 3e-24
Identities = 57/121 (47%), Positives = 71/121 (58%), Gaps = 1/121 (0%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFD 182
S+ GF+S D V V G+ Q FAEA SEPG+ FVAAKFDGILGMA+ IAV V PVF+
Sbjct: 161 SMKGFISKDSVCVAGVCAEDQPFAEATSEPGITFVAAKFDGILGMAYPEIAVLGVQPVFN 220
Query: 183 NMVAQGLV-QPVFSFYLNRDPGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMDS 359
+ Q V +FSF+LNR+P + D Y + VP+ R YW+F MD
Sbjct: 221 TLFEQKKVPSNLFSFWLNRNPDSEIGGEITFGGIDSRRYVEPITYVPVTRKGYWQFKMDK 280
Query: 360 V 362
V
Sbjct: 281 V 281
>AF077544-5|AAK39240.1| 398|Caenorhabditis elegans Aspartyl
protease protein 3 protein.
Length = 398
Score = 78.6 bits (185), Expect = 1e-15
Identities = 40/108 (37%), Positives = 61/108 (56%), Gaps = 3/108 (2%)
Frame = +3
Query: 57 RRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNMVAQGLV--QPVFSFYL 230
+ Q A A SEPG+ FVAAKFDGI GM + TI+V+ ++ D + A + +F+F+L
Sbjct: 158 KNQGLACATSEPGITFVAAKFDGIFGMGWDTISVNKISQPMDQIFANSAICKNQLFAFWL 217
Query: 231 NRDPG-ATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMDSVNVN 371
+RD T +DP HY G++ PL+ + YW + SV ++
Sbjct: 218 SRDANDITNGGEITLCETDPNHYVGNIAWEPLVSEDYWRIKLASVVID 265
>Z82092-3|CAB05013.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 72.1 bits (169), Expect = 1e-13
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Frame = +3
Query: 9 SGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNM 188
SG+L TD V +GGLK+++Q F A + F DGI G+A+ ++VD VTP N+
Sbjct: 135 SGYLGTDTVEIGGLKIQKQEFGVA-NIVDYDFGTRPIDGIFGLAWPALSVDQVTPPMQNL 193
Query: 189 VAQG-LVQPVFS-FYLNRDPG--ATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMD 356
V+Q L P+F+ F+ RDP + D + ++ VP+ TYW+F +D
Sbjct: 194 VSQNQLDAPIFTIFFDKRDPDYYYPSNGLITYGGLDTKNCNANISYVPVSSKTYWQFKVD 253
Query: 357 SVNV 368
V
Sbjct: 254 GFQV 257
Score = 49.6 bits (113), Expect = 7e-07
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +3
Query: 9 SGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNM 188
+G+L TD V +GGL + +Q A + GL F + GI +A+ ++VD VTP +
Sbjct: 524 TGYLGTDTVQMGGLTITKQELGIA-TIVGLGFGLKPYVGIFELAWPALSVDQVTPPMQKL 582
Query: 189 VAQG-LVQPVFSFYLN-RDPGATTXXXXXXXXS--DPAHYRGDLVRVPLLRDTYWE 344
++Q L P+F+ +L+ +D G D + ++ V L T+W+
Sbjct: 583 ISQNQLDAPMFTIWLDQKDQGVYVGYTGLITYGGFDNKNCDANVTYVALSSKTFWQ 638
>AL021471-3|CAA16297.1| 638|Caenorhabditis elegans Hypothetical
protein ZK384.3 protein.
Length = 638
Score = 72.1 bits (169), Expect = 1e-13
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Frame = +3
Query: 9 SGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNM 188
SG+L TD V +GGLK+++Q F A + F DGI G+A+ ++VD VTP N+
Sbjct: 135 SGYLGTDTVEIGGLKIQKQEFGVA-NIVDYDFGTRPIDGIFGLAWPALSVDQVTPPMQNL 193
Query: 189 VAQG-LVQPVFS-FYLNRDPG--ATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMD 356
V+Q L P+F+ F+ RDP + D + ++ VP+ TYW+F +D
Sbjct: 194 VSQNQLDAPIFTIFFDKRDPDYYYPSNGLITYGGLDTKNCNANISYVPVSSKTYWQFKVD 253
Query: 357 SVNV 368
V
Sbjct: 254 GFQV 257
Score = 49.6 bits (113), Expect = 7e-07
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Frame = +3
Query: 9 SGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNM 188
+G+L TD V +GGL + +Q A + GL F + GI +A+ ++VD VTP +
Sbjct: 524 TGYLGTDTVQMGGLTITKQELGIA-TIVGLGFGLKPYVGIFELAWPALSVDQVTPPMQKL 582
Query: 189 VAQG-LVQPVFSFYLN-RDPGATTXXXXXXXXS--DPAHYRGDLVRVPLLRDTYWE 344
++Q L P+F+ +L+ +D G D + ++ V L T+W+
Sbjct: 583 ISQNQLDAPMFTIWLDQKDQGVYVGYTGLITYGGFDNKNCDANVTYVALSSKTFWQ 638
>AL132948-20|CAD31821.1| 391|Caenorhabditis elegans Hypothetical
protein Y39B6A.24 protein.
Length = 391
Score = 68.9 bits (161), Expect = 1e-12
Identities = 44/124 (35%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Frame = +3
Query: 9 SGFLSTDDVTVGG-LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDN 185
SG+L TD V +GG L +R+Q A ++ + F DGI G+A+ +AVD +TP N
Sbjct: 139 SGYLGTDTVGLGGGLTIRKQELGIA-NKLDVDFAVQPMDGIFGLAWPALAVDQITPPMQN 197
Query: 186 MVAQGLVQPVFSFYLNRDPGAT---TXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMD 356
+++Q L PVFS +L+R A+ + D + + VPL TYW+F MD
Sbjct: 198 LISQ-LDVPVFSVWLDRKIQASHGGSAGMITYGGIDTKNCDAGVTYVPLTAKTYWQFKMD 256
Query: 357 SVNV 368
V
Sbjct: 257 GFAV 260
>AL132948-19|CAD31820.1| 395|Caenorhabditis elegans Hypothetical
protein Y39B6A.23 protein.
Length = 395
Score = 64.1 bits (149), Expect = 3e-11
Identities = 41/124 (33%), Positives = 62/124 (50%), Gaps = 4/124 (3%)
Frame = +3
Query: 9 SGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNM 188
SG+L TD + +GGL V+ Q F A + G + DGI G+ + I+VD VTP N+
Sbjct: 142 SGYLGTDVLQLGGLTVKAQEFGVATNL-GSVLGSEPMDGIFGLGWPAISVDQVTPPMQNL 200
Query: 189 VAQ-GLVQPVFSFYLNRDPGAT---TXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMD 356
++Q L P+FS +++R + T D + + V L TYW+F MD
Sbjct: 201 ISQKQLDAPLFSIWVDRKLQVSQGGTGGLITYGAVDTKNCDAQVNYVALSSKTYWQFPMD 260
Query: 357 SVNV 368
V +
Sbjct: 261 GVAI 264
>AF045640-8|AAC02571.1| 394|Caenorhabditis elegans Hypothetical
protein C11D2.2 protein.
Length = 394
Score = 62.5 bits (145), Expect = 9e-11
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 5/128 (3%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGG--LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 176
S SG+ D + L ++ Q F +A + F + DGILG+ F+ +AV V P
Sbjct: 140 SASGYFGKDTLCFSDTTLCIKSQIFGQA-NNIAPFFANQEIDGILGLGFTDLAVHSVPPP 198
Query: 177 FDNMVAQGLV-QPVFSFYLNRD--PGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEF 347
F N V QGLV +P+F+ YL + DP H + +PL + YW+F
Sbjct: 199 FVNAVEQGLVDEPIFTVYLEHHGIKKEASGGYFTYGGEDPDHCGEIITWIPLTKAAYWQF 258
Query: 348 HMDSVNVN 371
M + ++
Sbjct: 259 RMQGIGID 266
>AJ009861-1|CAA08899.1| 395|Caenorhabditis elegans aspartic
protease protein.
Length = 395
Score = 62.1 bits (144), Expect = 1e-10
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 4/126 (3%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFD 182
S +G+L D + GGL V+ Q F + + F DGILG+ ++ +AVD V P
Sbjct: 139 SCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGWTALAVDQVVPPMQ 197
Query: 183 NMVAQ-GLVQPVFSFYLNRD---PGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFH 350
N++AQ L P+F+ +L+R+ T D + + VPL TYW+F
Sbjct: 198 NLIAQKQLDAPLFTVWLDRNLQIAQGTPGGLITYGAIDTVNCAKQVTYVPLSAKTYWQFP 257
Query: 351 MDSVNV 368
+D+ V
Sbjct: 258 LDAFAV 263
>U41746-3|AAO25990.1| 429|Caenorhabditis elegans Aspartyl protease
protein 2, isoformb protein.
Length = 429
Score = 61.3 bits (142), Expect = 2e-10
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHV 167
S GFL D +T GG L V F +A S F DGILG+AF +IAVD +
Sbjct: 172 SARGFLGQDTITFGGIGEPQLAVPNTVFGQATSLAAF-FEGQPLDGILGLAFKSIAVDQI 230
Query: 168 TPVFDNMVAQGLVQ-PVFSFYLNR--DPGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTY 338
TP F N + Q LV P+F+ +L D D + + PL TY
Sbjct: 231 TPPFINAINQNLVDLPLFTVFLEHEGDQNGVQGGVYTYGGIDTKNCGPVIAYQPLSSATY 290
Query: 339 WEFHMDSV 362
++F M ++
Sbjct: 291 YQFKMSAI 298
>U41746-2|AAO25989.1| 635|Caenorhabditis elegans Aspartyl protease
protein 2, isoforma protein.
Length = 635
Score = 61.3 bits (142), Expect = 2e-10
Identities = 43/128 (33%), Positives = 58/128 (45%), Gaps = 8/128 (6%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHV 167
S GFL D +T GG L V F +A S F DGILG+AF +IAVD +
Sbjct: 378 SARGFLGQDTITFGGIGEPQLAVPNTVFGQATSLAAF-FEGQPLDGILGLAFKSIAVDQI 436
Query: 168 TPVFDNMVAQGLVQ-PVFSFYLNR--DPGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTY 338
TP F N + Q LV P+F+ +L D D + + PL TY
Sbjct: 437 TPPFINAINQNLVDLPLFTVFLEHEGDQNGVQGGVYTYGGIDTKNCGPVIAYQPLSSATY 496
Query: 339 WEFHMDSV 362
++F M ++
Sbjct: 497 YQFKMSAI 504
Score = 46.0 bits (104), Expect = 9e-06
Identities = 27/80 (33%), Positives = 37/80 (46%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFD 182
S SG L D V+ GG+ + + V A DGI+G+ F + ++ P F
Sbjct: 45 SASGILGFDTVSFGGISESQLIVPDTV-----VATAEDIDGIMGLGFLANSQQNIYPPFV 99
Query: 183 NMVAQGLVQPVFSFYLNRDP 242
N V Q LV P+F YL P
Sbjct: 100 NAVGQKLVDPIFHVYLGNRP 119
>AL132948-17|CAC51056.1| 396|Caenorhabditis elegans Hypothetical
protein Y39B6A.20 protein.
Length = 396
Score = 61.3 bits (142), Expect = 2e-10
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFD 182
S +G+L D + GGL V+ Q F + + F DGILG+ + +AVD V P
Sbjct: 140 SCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGWPALAVDQVVPPMQ 198
Query: 183 NMVAQ-GLVQPVFSFYLNRD---PGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFH 350
N++AQ L P+F+ +L+R+ T D + + VPL TYW+F
Sbjct: 199 NLIAQKQLDAPLFTVWLDRNLQIAQGTPGGLITYGAIDTVNCAKQVTYVPLSAKTYWQFP 258
Query: 351 MDSVNV 368
+D+ V
Sbjct: 259 LDAFAV 264
>AF210248-1|AAF19445.1| 396|Caenorhabditis elegans aspartic
protease 1 protein.
Length = 396
Score = 61.3 bits (142), Expect = 2e-10
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFD 182
S +G+L D + GGL V+ Q F + + F DGILG+ + +AVD V P
Sbjct: 140 SCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGWPALAVDQVVPPMQ 198
Query: 183 NMVAQ-GLVQPVFSFYLNRD---PGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFH 350
N++AQ L P+F+ +L+R+ T D + + VPL TYW+F
Sbjct: 199 NLIAQKQLDAPLFTVWLDRNLQIAQGTPGGLITYGAIDTVNCAKQVTYVPLSAKTYWQFP 258
Query: 351 MDSVNV 368
+D+ V
Sbjct: 259 LDAFAV 264
>AF208526-1|AAF19442.1| 396|Caenorhabditis elegans aspartic
protease 1 protein.
Length = 396
Score = 61.3 bits (142), Expect = 2e-10
Identities = 40/126 (31%), Positives = 61/126 (48%), Gaps = 4/126 (3%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFD 182
S +G+L D + GGL V+ Q F + + F DGILG+ + +AVD V P
Sbjct: 140 SCNGYLGKDVLNFGGLTVQSQEFGVSTHLADV-FGYQPVDGILGLGWPALAVDQVVPPMQ 198
Query: 183 NMVAQ-GLVQPVFSFYLNRD---PGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFH 350
N++AQ L P+F+ +L+R+ T D + + VPL TYW+F
Sbjct: 199 NLIAQKQLDAPLFTVWLDRNLQIAQGTPGGLITYGAIDTVNCAKQVTYVPLSAKTYWQFP 258
Query: 351 MDSVNV 368
+D+ V
Sbjct: 259 LDAFAV 264
>AL132948-18|CAD31819.1| 390|Caenorhabditis elegans Hypothetical
protein Y39B6A.22 protein.
Length = 390
Score = 59.3 bits (137), Expect = 9e-10
Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 3/125 (2%)
Frame = +3
Query: 9 SGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNM 188
SG+L TD + +GGL V+ Q FA ++ DG+LG+A+ +AVD +TP N+
Sbjct: 139 SGYLGTDVLQLGGLTVKNQEFA-VTTQISDQMGHFPLDGVLGLAWPPVAVDQITPPMQNL 197
Query: 189 VAQGLVQPVFSFYLNR---DPGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMDS 359
+ Q L P+F+ +L+R + D + + V L T+W+F +D
Sbjct: 198 MPQ-LDAPIFTLWLDRVLQGSQGGSGGLITFGAIDTKNCDAQVNYVALSSKTFWQFPLDG 256
Query: 360 VNVNA 374
V + +
Sbjct: 257 VAIGS 261
>U97000-5|AAC47991.1| 393|Caenorhabditis elegans Aspartyl protease
protein 5 protein.
Length = 393
Score = 49.6 bits (113), Expect = 7e-07
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Frame = +3
Query: 12 GFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 176
G+L D V G L V TF A + F +GILG+AF+++AVDHV P
Sbjct: 140 GYLGEDTVAFGAVTEKQLPVPSTTFGIA-THISSDFKNDAAEGILGLAFTSLAVDHVVPP 198
Query: 177 FDNMVAQGLV-QPVFSFYLNRDPGATTXXXXXXXXS--DPAHYRGDLVRVPLLRDTYWEF 347
N + QGL+ QP+F+ +L A D + + PL TY++F
Sbjct: 199 LINAINQGLLDQPLFTVWLEHKGSANDVGGGVFTYGAVDTTNCGPVIAYQPLSSATYYQF 258
Query: 348 HMDSVNVNA 374
DS + +
Sbjct: 259 VADSFKLGS 267
>AF016435-2|AAB65877.2| 380|Caenorhabditis elegans Hypothetical
protein F59D6.2 protein.
Length = 380
Score = 49.6 bits (113), Expect = 7e-07
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Frame = +3
Query: 6 LSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDN 185
+SG L D++ G K++ Q F L+ V FDG+LG+ + A++ + N
Sbjct: 130 VSGDLGKDNIQFAGSKIQNQDFGIGTDATRLSGVT--FDGVLGLGWPATALNGTSTTMQN 187
Query: 186 MVAQGLVQPVFSFYLNRDP--GATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMD 356
++ Q L QP+F+ Y + T D H + + V L D+ W + +D
Sbjct: 188 LLPQ-LDQPLFTTYFTKSSVHNGTVGGEITFGAIDTTHCQSQINYVRLAYDSLWSYSID 245
>Z75527-3|CAA99777.1| 428|Caenorhabditis elegans Hypothetical
protein C15C8.3 protein.
Length = 428
Score = 49.2 bits (112), Expect = 9e-07
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Frame = +3
Query: 63 QTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDNMVAQG-LVQPVFSFYL-NR 236
Q F +A + G AF DGI+G+ + +AV+ TP N++ QG L QP F YL N
Sbjct: 199 QVFGQATTI-GEAFAKQPEDGIIGLGWPALAVNQQTPPLFNLMNQGKLDQPYFVVYLANI 257
Query: 237 DPGATTXXXXXXXXS-DPAHYRGDLVRVPLLRDTYWEFHMDSVN 365
P + D H ++ VPL T+W+F + V+
Sbjct: 258 GPTSQINGGAFTVGGLDTTHCSSNVDWVPLSTQTFWQFKLGGVS 301
>U34889-1|AAB06576.1| 388|Caenorhabditis elegans aspartic protease
protein.
Length = 388
Score = 48.0 bits (109), Expect = 2e-06
Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +3
Query: 12 GFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 176
G+L D V G L V TF A + F GILG+AF+++AVDHV P
Sbjct: 135 GYLGEDTVAFGAVTEKQLPVPSTTFGIA-THISSDFKNDAAGGILGLAFTSLAVDHVVPP 193
Query: 177 FDNMVAQGLV-QPVFSFYLNRDPGATTXXXXXXXXS--DPAHYRGDLVRVPLLRDTYWEF 347
N + QGL+ QP+F+ +L A D + + PL TY++F
Sbjct: 194 LINAINQGLLDQPLFTVWLEHKGSANDVGGGVFTYGAVDTTNCGPVIAYQPLSSATYYQF 253
Query: 348 HMDS 359
DS
Sbjct: 254 VADS 257
>U97000-3|AAC47996.1| 389|Caenorhabditis elegans Aspartyl protease
protein 6 protein.
Length = 389
Score = 46.0 bits (104), Expect = 9e-06
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 8/121 (6%)
Frame = +3
Query: 9 SGFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTP 173
+G L D V G L V TF A S+ F DGILG+AF+++AVD V P
Sbjct: 137 AGILGQDTVRFGAKGDSQLSVPTTTFGIA-SKISADFKNDATDGILGLAFTSLAVDGVVP 195
Query: 174 VFDNMVAQGLV-QPVFSFYLNRDPGATTXXXXXXXXS--DPAHYRGDLVRVPLLRDTYWE 344
N + QG++ QP+FS +L A D + + PL TY++
Sbjct: 196 PLINAINQGILDQPLFSVWLEHRGAANNVGGGVFTYGAIDTTNCGALVAYQPLSSATYYQ 255
Query: 345 F 347
F
Sbjct: 256 F 256
>AF016435-1|AAB65878.1| 474|Caenorhabditis elegans Hypothetical
protein F59D6.3 protein.
Length = 474
Score = 43.6 bits (98), Expect = 5e-05
Identities = 26/123 (21%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
Frame = +3
Query: 6 LSGFLSTDDVTVGGLKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPVFDN 185
+SG + D G ++ Q F + FDG+LG+ + A++ + N
Sbjct: 224 VSGNVGKDTAQFAGFTIQSQDFG--IGTAATRLFGETFDGVLGLGWPATALNGTSTTMQN 281
Query: 186 MVAQGLVQPVFSFYLNRD--PGATTXXXXXXXXSDPAHYRGDLVRVPLLRDTYWEFHMDS 359
++ Q L Q +F+ Y + T D H + + VPL +++W + +D
Sbjct: 282 LLPQ-LDQKLFTTYFTKSNMHNGTAGGDIMFGAIDTTHCQSQVNYVPLAYNSFWSYSVDG 340
Query: 360 VNV 368
++
Sbjct: 341 FSI 343
>U64851-4|AAC47989.1| 389|Caenorhabditis elegans Hypothetical
protein F28A12.4 protein.
Length = 389
Score = 43.2 bits (97), Expect = 6e-05
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Frame = +3
Query: 12 GFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHVTPV 176
G L D V +GG L + R ++ G F + +GI G+AF+ +AVD++TP
Sbjct: 139 GTLGIDTVKIGGSGEAQLAIPR-SYLGVADTVGSDFKWSPKEGIFGLAFTALAVDNITPP 197
Query: 177 FDNMVAQGLV-QPVFSFYLNR 236
N + QGL+ QP+F+ + +
Sbjct: 198 IINAINQGLLDQPLFTTWFGQ 218
>U97000-4|AAC47994.1| 395|Caenorhabditis elegans Hypothetical
protein F21F8.4 protein.
Length = 395
Score = 42.7 bits (96), Expect = 8e-05
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGG-----LKVRRQTFAEAVSEPGLAFVAAKFDGILGMAFSTIAVDHV 167
S G + D V GG L V TF A S F +GILG+AF+++AVD V
Sbjct: 137 SAKGIMGVDTVAFGGASEQQLLVPSTTFGIA-SHISSNFKNDAAEGILGLAFTSLAVDGV 195
Query: 168 TPVFDNMVAQGLV-QPVFSFYLNRDPGATTXXXXXXXXS--DPAHYRGDLVRVPLLRDTY 338
TP N + + ++ QP+F+ +L A D + + PL TY
Sbjct: 196 TPPLINAINKKILDQPLFTVFLEHKGTAKNVGGGVFTYGAVDTTNCGPVIAYQPLSSATY 255
Query: 339 WEFHMDSVNVNA 374
++F D + +
Sbjct: 256 YQFVADGFKLGS 267
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 29.5 bits (63), Expect = 0.82
Identities = 19/59 (32%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Frame = -2
Query: 206 HESLSHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHG---LGERLAPHLEPAH 39
H HH H GH A H E G H G G H G H PAH
Sbjct: 457 HHGEHHHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAH 515
Score = 29.5 bits (63), Expect = 0.82
Identities = 23/64 (35%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Frame = -2
Query: 212 GLHESLSH--HVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRHGLGERLAPHLE--P 45
G HES H H H GH H + H G H G HG APH E
Sbjct: 588 GHHESHGHGHHAPAHHGH--HGEHGVHHGHHGAGYGAHHGH----HGAHHHHAPHHEHHE 641
Query: 44 AHGD 33
HGD
Sbjct: 642 HHGD 645
Score = 28.7 bits (61), Expect = 1.4
Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Frame = -2
Query: 206 HESLSHHVVEHRGHMVHCDSAEGHPED----PVELGGHEGKPGLRHGLGERLAPHLEPAH 39
H HH H GH + GH + P GH G+ G HG H PAH
Sbjct: 505 HHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAH-HGHHGEHGTHHG---HHGSHHSPAH 560
Score = 27.5 bits (58), Expect = 3.3
Identities = 16/52 (30%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Frame = -2
Query: 206 HESLSHHVVEHRGHMVHCDS---------AEGHPEDPVELGGHEGKPGLRHG 78
H HH H GH H S + GH GH G+ G+ HG
Sbjct: 563 HHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Score = 27.1 bits (57), Expect = 4.4
Identities = 17/48 (35%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Frame = -2
Query: 218 EDGLHESL--SHHVVEHRGHMVHCDSAEGHPEDPVELGGHEGKPGLRH 81
E G H SHH H GH A H E G H G G H
Sbjct: 486 EHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHH 533
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 133 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERL 2
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 2 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 43
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 133 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERL 2
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 4 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 45
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 133 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERL 2
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 1 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 42
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 133 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERL 2
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 39 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 80
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 27.9 bits (59), Expect = 2.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 133 PRIPSNLAATKASPGSDTASANVWRRTLSPPTVTSSVERKPERL 2
P IPS+ + ++ P + AS V TL PP+ +S+ +KP L
Sbjct: 113 PAIPSSSSCSE--PSTSQASTVVSAPTLPPPSPLTSLPQKPAPL 154
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -2
Query: 170 GHMVHCDSAE---GHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHGDIISGEEAGEA 3
G + C + E P+ P G +G+PG G+ AP GD + + GEA
Sbjct: 129 GGCIKCPAGEPGPAGPDGPAGAPGADGQPGAPGNAGQDGAPGAAGEQGDAGAAGQDGEA 187
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 27.9 bits (59), Expect = 2.5
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Frame = -2
Query: 170 GHMVHCDSAE---GHPEDPVELGGHEGKPGLRHGLGERLAPHLEPAHGDIISGEEAGEA 3
G + C + E P+ P G +G+PG G+ AP GD + + GEA
Sbjct: 129 GGCIKCPAGEPGPAGPDGPAGAPGADGQPGAPGNAGQDGAPGAAGEQGDAGAAGQDGEA 187
>Z77663-17|CAB54256.5| 500|Caenorhabditis elegans Hypothetical
protein F53F4.14 protein.
Length = 500
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 137 GLQHYRSGPCDPGVRQHGGSGTRAARLLVLSQQGPR 244
GL+H +S D G++ G RAARL + + PR
Sbjct: 429 GLEHLKSALNDRGLKCGGSLVERAARLWCVKGKQPR 464
>U55363-2|AAA97961.3| 357|Caenorhabditis elegans Serpentine
receptor, class h protein28 protein.
Length = 357
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 120 DGILGMAFSTIAVD-HVTPVFDNMVAQGLVQPVFSFYLNR 236
+GI + FST + H T V N V + +F FYL R
Sbjct: 43 EGIYCLYFSTDQLQQHYTSVLKNHVFLNFIGEIFGFYLMR 82
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 26.6 bits (56), Expect = 5.8
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -3
Query: 205 TSP*ATMLSNT--GVTWSTAIVLKAIPRIPSNLAATKASPGSDTASANVWRRTLSPPTVT 32
T+P T + T GVT + + S LAAT +P ++T + V TVT
Sbjct: 231 TAPIVTTANTTTQGVTTTAGVTTTVTRAQNSTLAATTTAPSTNTTTQGVTTTVGKTTTVT 290
Query: 31 SS 26
++
Sbjct: 291 TA 292
>AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical
protein F53F4.14 protein.
Length = 500
Score = 26.6 bits (56), Expect = 5.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 137 GLQHYRSGPCDPGVRQHGGSGTRAARLLVLSQQGPR 244
GL+H +S D G++ G RAARL + + PR
Sbjct: 429 GLEHLKSALNDRGLKCGGSLVERAARLWCVKGKQPR 464
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 26.6 bits (56), Expect = 5.8
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Frame = -2
Query: 113 GGHEGKPGLRHGLGERLA-PHLEPAHG 36
G G PG RHG G R PH HG
Sbjct: 341 GSRSGSPGGRHGHGGRHGPPHCPGRHG 367
>Z29116-1|CAA82367.2| 331|Caenorhabditis elegans Hypothetical
protein ZK507.1 protein.
Length = 331
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 360 QSPCGTPSTCPGVGA 316
QS C +PST PG GA
Sbjct: 274 QSTCPSPSTAPGTGA 288
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 26.2 bits (55), Expect = 7.6
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -2
Query: 233 VEIEREDGLHESLSHHVVEHRGHMVHCDSAEGHPEDPVEL 114
+++ERE G+ + HRG++++ GH + E+
Sbjct: 80 LQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEV 119
>AL117204-25|CAB55139.2| 528|Caenorhabditis elegans Hypothetical
protein Y116A8C.38 protein.
Length = 528
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 3 SLSGFLSTDDVTVGGLKVRRQTFAEAVSE 89
S++GF+ D +G LKVRR AE V+E
Sbjct: 322 SVNGFVKLSDFGMG-LKVRRNESAEKVAE 349
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,706,923
Number of Sequences: 27780
Number of extensions: 140711
Number of successful extensions: 580
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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