Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4105
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1268 - 35345283-35345462,35345577-35345636,35345719-353460...    28   3.9  
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209...    27   6.9  

>02_05_1268 -
           35345283-35345462,35345577-35345636,35345719-35346042,
           35346266-35346349,35346784-35346872,35346959-35347073,
           35347534-35347660,35347743-35347882,35348010-35348071,
           35348769-35348838,35348947-35349066,35349155-35349232,
           35349738-35349968,35350110-35350220
          Length = 596

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 358 HVLNLFTLFSYERIKNSRGGPVPNSPYS 441
           H+L+L T+  +E +K  +GGP P   +S
Sbjct: 256 HILDLETMM-WEEVKTGKGGPAPRYDHS 282


>10_08_1059 +
           22618999-22619206,22620386-22620416,22620440-22620974,
           22621065-22621319
          Length = 342

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 246 LNVKQLKTYTLIVFVINNIYDVNDPFNVDV*RSDSLGIRRG 124
           LNV+++K Y    +VI+++ DV      D+   D +  + G
Sbjct: 212 LNVEEIKNYNWAKYVIDHLIDVAPKAQHDIKHKDKVANKAG 252


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,122,834
Number of Sequences: 37544
Number of extensions: 171729
Number of successful extensions: 272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)