Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4104
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   2.9  
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    26   2.9  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    26   3.9  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   5.1  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    25   5.1  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   5.1  
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe...    25   6.8  

>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 176 YCIYYETEIFLTFLKVPL 229
           YC YY  +I  TFL +PL
Sbjct: 507 YCEYYNFDIAETFLSIPL 524


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 97  CQFQFFFMKSIIFLFIFYCFDVWTSS 20
           C+  +F M  ++FL IF  F  W S+
Sbjct: 46  CRLVYFIMAVMVFLVIFDGFPFWLSA 71


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +2

Query: 296  NVPVNHNLSSWAHLLSVGTCISLTSHLTCVSNLVTLCVCVTQRSVSL 436
            NVP   NL + +   +V   + L      +SNLVT  +C  +  VSL
Sbjct: 2347 NVPEIENLDAGSRYRAVKKILDLLKVNQGLSNLVTKLLCSFENYVSL 2393


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 112 NSDVKCQFQFFFMKSIIFLFIFYC 41
           NS++       F K  IF F++YC
Sbjct: 57  NSNISRNISNTFFKKSIFFFVYYC 80


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 359 SLTSHLTCVSNLVTLCVCVTQ 421
           +L SH+T +S + TLC+ +T+
Sbjct: 395 NLASHVTVISAVATLCLWLTE 415


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 INNISKRPSERADSVVDADEYCIYYETEI 202
           IN + + P E  ++++ +D+  I ++TE+
Sbjct: 637 INGVIEVPKELLENIIQSDDSLINFDTEV 665


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 200 SQSHNKYNTRPRQLHYR 150
           SQ H  Y+TRP  LH R
Sbjct: 89  SQHHGVYHTRPASLHSR 105


>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +2

Query: 218 KVPLLTSKTCKLLLFYQNLQSPTDPYNVPVNHNLSSWAH 334
           K+PLLT K+   ++    ++     +N   N+  + W H
Sbjct: 502 KIPLLTVKSVSYIIEKMEVEGVDSWFNDTENNGHAQWVH 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,986,473
Number of Sequences: 5004
Number of extensions: 37094
Number of successful extensions: 86
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)