Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4104
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical ...    28   3.5  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical p...    27   8.0  
Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical p...    27   8.0  

>AF003132-2|AAB54134.2|  568|Caenorhabditis elegans Hypothetical
           protein F37E3.2 protein.
          Length = 568

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 269 NLQSPTDPYNVPVNHNLSSWAHLLSVGTCISLTSHLT 379
           NL +P  PY + + ++  S  H   +G+C    + LT
Sbjct: 69  NLPNPDAPYTIVIENSNESLTHSFLLGSCSKTVTSLT 105


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 118 YYNSDVKCQFQFFFMKSIIFLFIFYC 41
           YYN+D +    + F+  + FL+I YC
Sbjct: 197 YYNNDWQSWNNYLFVAIMFFLYITYC 222


>AF016442-9|AAB65921.1|  714|Caenorhabditis elegans Hypothetical
           protein K12B6.8 protein.
          Length = 714

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 136 PF*NIIYYNSDVKCQFQFFFMKSIIFLFI 50
           P+ N  Y N D++   +FF +K+ IFLFI
Sbjct: 97  PYNNQFYLNRDMESD-KFFLLKNEIFLFI 124


>Z66500-13|CAA91312.1| 1780|Caenorhabditis elegans Hypothetical
            protein F10B5.7 protein.
          Length = 1780

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 137  PSERADSVVDADEYCIYYETEIFLTF 214
            P E A S +D DEY I ++ E+ L +
Sbjct: 1142 PDEMAGSDLDGDEYSIIWDQEMLLDY 1167


>Z48334-10|CAA88315.1| 1780|Caenorhabditis elegans Hypothetical
            protein F10B5.7 protein.
          Length = 1780

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 137  PSERADSVVDADEYCIYYETEIFLTF 214
            P E A S +D DEY I ++ E+ L +
Sbjct: 1142 PDEMAGSDLDGDEYSIIWDQEMLLDY 1167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,563
Number of Sequences: 27780
Number of extensions: 210407
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)