Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4100
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    28   1.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    27   2.2  
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   6.7  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   6.7  
SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.7  
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa...    25   6.7  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   8.8  

>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 142 YIRNSETIIGFPRNDREYERDHVEYSE--PEYSIIPEAYGR 258
           Y RN+ +I+ FPR+ R +  D   +S+  P +++   AY R
Sbjct: 306 YQRNNGSILAFPRSCRSFALDGSFHSDEIPNFTMSGAAYAR 346


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 272  RGYSSRPYASGMIEYSGSL-YSTWSRSYSRSFRGNPIIVSELRMY 141
            R  S  PY + M +   ++ YS W++  +   R NPI +  +  Y
Sbjct: 1237 RQTSKEPYPARMDDLGSAIFYSAWNQCIAEVIRRNPIDIYHINDY 1281


>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 37  RSLPDKKNNRNGVVCHPENFQRNLDTRYCRKQENGYIRNSETIIGFPRNDREYERDHVEY 216
           R +P K N R  V  + +    NL  +   +Q   Y+   ET +GF     E   DH   
Sbjct: 616 RMVPRKDNKRIRVTFNGD-VAGNLSWKLWPQQREIYVLPGETALGF--YTAENTSDHDIV 672

Query: 217 SEPEYSIIP 243
               Y+I+P
Sbjct: 673 GVATYNIVP 681


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 20/69 (28%), Positives = 29/69 (42%)
 Frame = +1

Query: 37  RSLPDKKNNRNGVVCHPENFQRNLDTRYCRKQENGYIRNSETIIGFPRNDREYERDHVEY 216
           R +P K N R  V  + +    NL  +   +Q   Y+   ET +GF     E   DH   
Sbjct: 616 RMVPRKDNKRIRVTFNGD-VAGNLSWKLWPQQREIYVLPGETALGF--YTAENTSDHDIV 672

Query: 217 SEPEYSIIP 243
               Y+I+P
Sbjct: 673 GVATYNIVP 681


>SPCC757.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 136 SLVFCSSECPGFVGSFLDDKRRRSGC 59
           S V+C   C G+VGS   DK+    C
Sbjct: 8   SRVYCKYTCCGYVGSLDHDKQDAHVC 33


>SPBC337.15c |coq7||ubiquinone biosynthesis protein
           Coq7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 157 ETIIGFPRNDREYERDHVEYSEPEYSII 240
           ET+IG   ND+  E  H+E   PE+  I
Sbjct: 138 ETVIGGHYNDQLRETAHLENKAPEFKEI 165


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -1

Query: 206 WSRSYSRSFRGNPIIVSELRMYPF 135
           +  S ++SFR  P+IV ++  YP+
Sbjct: 410 YGASLTKSFRVKPLIVQDIINYPY 433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,432,701
Number of Sequences: 5004
Number of extensions: 48459
Number of successful extensions: 128
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)