Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4100
         (620 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199...    29   3.9  
03_05_0978 - 29358778-29358857,29359149-29359289,29359375-293594...    28   5.2  

>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
            33319949-33320011,33320103-33320496,33320684-33320796,
            33320932-33321639,33321667-33323199,33323395-33323607,
            33323718-33324700,33324890-33325423,33325694-33325820,
            33326083-33326162,33327347-33327377,33327949-33328053,
            33328119-33328124,33328349-33328985,33329144-33329478,
            33330394-33331113
          Length = 2792

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 613  HVPYKSNESFTFKLLFIVLVEK*MHHYLNLQNTNKNSLNRIRYRIVLTGHSTYTT 449
            +V ++ NE      L +++VEK  H Y  L+    +   R +   +L G++ Y T
Sbjct: 2340 YVNFQQNEITKLSNLQVIVVEKLFHKY-KLKERESSCKRRFKCNCLLQGNNLYAT 2393


>03_05_0978 -
           29358778-29358857,29359149-29359289,29359375-29359468,
           29360931-29361170,29361438-29361488,29361850-29361936,
           29362189-29362256,29362393-29362447,29362569-29362630,
           29362751-29362951,29363043-29363202,29363294-29363482
          Length = 475

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/55 (21%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 168 DYRFGIAYVPVLLFSAVASVQVSLEV-FWMTNDAVPVVLFIGQGAQGAIVEMMGW 7
           DY+  + + P+L+      V++S+   +W+    + ++LFIG  ++     ++ W
Sbjct: 144 DYKLALLFQPMLMLGITIGVELSVIFPYWLITVLI-IILFIGTSSRSFYKGILMW 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,171,466
Number of Sequences: 37544
Number of extensions: 291278
Number of successful extensions: 738
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)