Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4100
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    31   0.66 
U23453-4|AAC46756.2|  564|Caenorhabditis elegans Acid sphingomye...    31   0.88 
AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.      29   2.7  
U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like ...    28   4.7  
Z68159-1|CAA92283.1|  339|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine rece...    28   6.2  
U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical ...    27   8.2  
AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical ...    27   8.2  

>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 23/86 (26%), Positives = 35/86 (40%)
 Frame = +1

Query: 22  NNGSLRSLPDKKNNRNGVVCHPENFQRNLDTRYCRKQENGYIRNSETIIGFPRNDREYER 201
           N  S  S   K +N +      ENF++  D  +  K+    ++ S   +  P N    E 
Sbjct: 528 NKISNASEVQKNSNFHNAPKQQENFRKAEDQNWFNKKS---LQTSSDQVNVPENGICAEC 584

Query: 202 DHVEYSEPEYSIIPEAYGREEYPRSC 279
             V   EP  S+ P+ + RE  P  C
Sbjct: 585 KQVGGHEPSCSLAPKTWKRERPPPQC 610


>U23453-4|AAC46756.2|  564|Caenorhabditis elegans Acid
           sphingomyelinase protein 1 protein.
          Length = 564

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 6   TSPSSQQWLLALLAR*KEQPERRRLSSRKLPTKPGHSLLQ 125
           T PS   W++AL      +P+R R+S +K+  KP  S+ Q
Sbjct: 121 TDPSESGWMVAL----PPKPKRTRISKKKVQKKPNMSMSQ 156


>AF025469-1|AAG00030.3|  578|Caenorhabditis elegans Hypothetical
           protein W09B6.3 protein.
          Length = 578

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 206 WSRSYSRSFRGNPIIVSELRMYPFSC 129
           WSRS+ R  RGN IIV   +M  + C
Sbjct: 93  WSRSFERVVRGNHIIVQIEKMEVYKC 118


>Z81461-9|CAB62796.1|  597|Caenorhabditis elegans Hypothetical
           protein C04F12.3 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 613 HVPYKSNESFTFKLLFIVLVEK*MHHYLNLQNTN 512
           HV  K+ +SF+ KLL  V+     +  +N+QNT+
Sbjct: 179 HVAAKNGQSFSLKLLLSVIPPDIKNEVINVQNTH 212


>AF348169-1|AAK37547.1|  597|Caenorhabditis elegans IKB-1 protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 613 HVPYKSNESFTFKLLFIVLVEK*MHHYLNLQNTN 512
           HV  K+ +SF+ KLL  V+     +  +N+QNT+
Sbjct: 179 HVAAKNGQSFSLKLLLSVIPPDIKNEVINVQNTH 212


>U00058-2|AAL02528.2|  832|Caenorhabditis elegans Hypothetical
           protein W03A5.1 protein.
          Length = 832

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -2

Query: 523 QNTNKNSLNRIRYRIVLTGHSTYTTPVTLMSLTALEHYVSTLLPLRIRKHNGMKNYC*D 347
           Q   K +  + RY++    H +  TP   +   A+ ++   +LP  ++K    K  C D
Sbjct: 289 QIAQKTANPKPRYKLSKCSHISRDTPYYGIMANAVNYFYGEMLPQNVKKERTTKMQCID 347


>AF068713-14|AAK73895.1|  172|Caenorhabditis elegans Ground-like
           (grd related) protein29 protein.
          Length = 172

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +1

Query: 40  SLPDKKNNRNGVVC--HPENFQRNLDTRYCRKQENGY 144
           +L +KK  R  V+C  +P  F    DT YC  Q NG+
Sbjct: 129 ALENKKLQRFTVICSENPFVFSIRADTAYCGVQRNGH 165


>Z68159-1|CAA92283.1|  339|Caenorhabditis elegans Hypothetical
           protein C33D9.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 457 YTTPVTLMSLTALEHYVSTLLPLRIRKHNGM 365
           YT P+T+  +  L H  S + P+ + KH  +
Sbjct: 206 YTPPMTMAEMYYLAHRYSEIYPIHVYKHGAI 236


>U64836-8|AAG24063.1|  339|Caenorhabditis elegans Serpentine
           receptor, class h protein187 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -3

Query: 168 DYRFGIAYVPVLLFSAVASVQVSLEVFWMTNDAVPVVL 55
           DY  GI  +PVLL   +A   V L    + N  VP++L
Sbjct: 66  DYSLGILTIPVLLLPYLAGFPVGL----LANSDVPIIL 99


>U41543-3|AAB37024.1|  572|Caenorhabditis elegans Hypothetical
           protein F46H5.7a protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 59  TTGTASFVIQKTSNETWTLATAENKRTGTYAIP 157
           T  T  F I +++  TW LA   N+   T AIP
Sbjct: 435 TIPTDGFTISQSNQGTWNLANGSNQPCFTGAIP 467


>AF125459-6|AAN60503.1|  219|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8b protein.
          Length = 219

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 48  R*KEQPERRRLSSRKLPTKPGHSLLQKTRERVHTQFRNDNRIPAERPGIRTRPRG 212
           R +E   +R  S R    K G     ++RER +   R D +    R   R+ PRG
Sbjct: 137 RDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRG 191


>AF125459-5|AAD12844.1|  345|Caenorhabditis elegans Hypothetical
           protein Y25C1A.8a protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 48  R*KEQPERRRLSSRKLPTKPGHSLLQKTRERVHTQFRNDNRIPAERPGIRTRPRG 212
           R +E   +R  S R    K G     ++RER +   R D +    R   R+ PRG
Sbjct: 263 RDRESHRKRSNSPRDRDRKRGKRSRSRSRERSYRDDRRDRKRSRSRERRRSPPRG 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,475,721
Number of Sequences: 27780
Number of extensions: 280550
Number of successful extensions: 796
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)