Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4099
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    28   1.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.8  
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    27   3.7  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   3.7  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    26   4.9  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   6.5  
SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr 1||...    26   6.5  
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   6.5  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   6.5  
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    25   8.6  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    25   8.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   8.6  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +2

Query: 515 FAHENNFAIMNTFFKKTNKQRWTWRSPNGKIKNEIDYILT 634
           + +  N+ + +  F+K ++Q W + S N  + N    I++
Sbjct: 295 YKYPRNYTVSDVLFRKVSRQYWPYTSENSVLANTPQSIIS 334


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 653  ICFCVSLLKCSLF-HFLFSRWVISKSIFVC 567
            ICF   +L+   F H L   WV  K+IFVC
Sbjct: 2605 ICFLRHMLEHQGFWHPLHKEWVTIKNIFVC 2634


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +2

Query: 182 GLYGVGFIVKKYLKRYITSFI-GLSERVALLRMNIDSLELSIIQVYAPTEASSDEEL 349
           GL+ +  +    L   I SF   L+ ++++   +IDS    +I+++ PT++S  +E+
Sbjct: 397 GLFQLSCLYPLSLNHLIQSFFQSLTSQISI--KDIDSKNKQVIKLFKPTKSSDRQEI 451


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 164 YTGDTPGLYGVGFIVKKYL----KRYITSFIGLSERVALLRM 277
           + G   G    GF+ K YL      YITSF+G    + LL M
Sbjct: 232 FAGPLIGPIAGGFLAKSYLGWRWTEYITSFMGFFSTLCLLFM 273


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/58 (29%), Positives = 30/58 (51%)
 Frame = +2

Query: 8   YIATYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTP 181
           +IA+Y++  +++   L + T C+  ++      S   KL  + E H E I  Y+GD P
Sbjct: 234 FIASYSLAEITSVFVLADGTACIFTLSS-----STLLKLHQSPEPHFELISKYSGDFP 286


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -2

Query: 561 FLKKVFIIAKL-FSCAKSMSLFPLQFLSPYPWLPVTVSLGLVCP 433
           F K  F+ ++L F C   +S   +Q  S  P +P T+     CP
Sbjct: 189 FFKTHFLFSQLSFECIPHLSDSSIQLSSTSPVIPFTLKWNNSCP 232


>SPAC6C3.09 |||RNase P subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 335

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 521 HENNFAIMNTFFKKTNKQRWTWR 589
           H  + ++++ +  +T + RWTWR
Sbjct: 311 HSGDSSLLSFYDSRTERIRWTWR 333


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +2

Query: 149 EFILYYTGDTPGLYGVGFIVKKYLKRYITSFIGLSERVALLRMNIDSLELSIIQVYAPTE 328
           + + Y   +   L    F+ K   + Y+  F   +++V L    I ++EL +   + PT 
Sbjct: 415 QLLTYQVKERYFLLSKSFVGKNQFRVYLQEFDFEADKVNL----ISTIELELPATFDPTS 470

Query: 329 ASSDEELEFF 358
            + DEE   F
Sbjct: 471 LTVDEEYSNF 480


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +2

Query: 191 GVGFIVKKYLKRYITS--FIGLSERVALLRMNI 283
           GVGF +  Y K+Y+T   F+G +    L  +NI
Sbjct: 192 GVGFTMFLYHKKYLTDKHFVGQNRSTFLATLNI 224


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 126 PSFLVSERPIMSKFIFFKHSVNSSS 52
           P F  S +P+ S F+F K    SS+
Sbjct: 315 PKFKSSSKPVKSSFVFTKPEAESSN 339


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 50  RLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILY 163
           RLL  TE    +  D +   E + + +T+++H EFI Y
Sbjct: 167 RLLRGTEIRLFMKEDQLQYLEEKTIKDTVKKHSEFISY 204


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 471  WLPVTVSLGLVCP 433
            W PV   LGL+CP
Sbjct: 2208 WFPVIFGLGLICP 2220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,142,614
Number of Sequences: 5004
Number of extensions: 67800
Number of successful extensions: 206
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)