Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4099
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0870 - 6789903-6792251 32 0.55
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 31 1.3
07_03_0959 - 22885750-22886001,22886073-22886195,22886343-228864... 30 1.7
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 29 2.9
12_02_1173 + 26692030-26692379,26692478-26692565,26693309-266934... 29 3.9
12_02_1172 + 26680246-26680595,26680693-26680780,26681478-266816... 29 3.9
01_06_1824 - 40146757-40147648,40150119-40150441 29 3.9
03_01_0376 + 2931338-2931414,2931609-2931755,2933105-2933173,293... 28 6.8
06_03_0731 - 23958101-23958458,23958525-23958535,23958641-23958667 28 9.0
01_05_0675 + 24191930-24191983,24192080-24192168,24192277-24192376 28 9.0
>01_01_0870 - 6789903-6792251
Length = 782
Score = 31.9 bits (69), Expect = 0.55
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 202 YCQKISEKIYYKL--HRSFRKSSAAKDEYR*LRIKHNSSLRSNRGLERRRI 348
YC S + KL H + SSA K Y + ++ S L+SNRGL R I
Sbjct: 371 YCVAYSNESGCKLWYHNLYNLSSADKPPYSKIYVRLGSKLKSNRGLATRWI 421
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +2
Query: 380 IQLSENNIIVMGDFNAKIGQTNPNETVTGNHGYG 481
I L E II++ F K+G+T NETV G G G
Sbjct: 229 IDLRETLIILVLVFMGKMGETGANETVGGGGGRG 262
>07_03_0959 -
22885750-22886001,22886073-22886195,22886343-22886429,
22886504-22886555,22886701-22886825,22887002-22887213,
22887317-22887518,22887928-22888032,22889643-22889704,
22889998-22890187,22890260-22890355,22890442-22890544,
22891448-22891551,22893284-22893370,22894033-22894118,
22894397-22894489,22895615-22895777,22895899-22896011,
22896113-22896235,22897393-22897444,22897843-22897886,
22897975-22898048,22898133-22898224,22899374-22899441,
22900817-22900892,22900952-22901215
Length = 1015
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 411 WVTLTPK*DKPIPTKQSLVTTDMEIETVEETGS 509
WV + P D IP + +D+ ++ VEE GS
Sbjct: 516 WVNMAPMEDLHIPKPNIFIPSDLSLKNVEEKGS 548
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 408 SWVTLTPK*DKPIPTKQSLVTTDMEIETVEETGSSILHMRTIL 536
+WV P D IP + +D+ ++ VEE GS +R L
Sbjct: 565 NWVNRAPMEDLHIPKPNIFIPSDLSLKNVEEKGSFPCMLRKTL 607
>12_02_1173 +
26692030-26692379,26692478-26692565,26693309-26693436,
26693514-26693705,26693810-26694012,26694127-26694290,
26694419-26694499,26694592-26694758,26694839-26694944,
26695097-26695347,26695388-26695508,26695594-26695722,
26695813-26696181
Length = 782
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +2
Query: 17 TYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTPGLYGV 196
T + T YS ++ + N++ D+I + +R + E + Y G PG+Y +
Sbjct: 658 TTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI 717
>12_02_1172 +
26680246-26680595,26680693-26680780,26681478-26681605,
26681683-26681874,26681979-26682181,26682296-26682459,
26682597-26682677,26682770-26682936,26683015-26683120,
26683269-26683519,26683610-26683682,26683751-26683879,
26683963-26684331
Length = 766
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/60 (23%), Positives = 27/60 (45%)
Frame = +2
Query: 17 TYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTPGLYGV 196
T + T YS ++ + N++ D+I + +R + E + Y G PG+Y +
Sbjct: 642 TTQIHTHMCYSNFNDIIHSIINMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI 701
>01_06_1824 - 40146757-40147648,40150119-40150441
Length = 404
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = +2
Query: 206 VKKYLKRYITSFIGLSERVALLRMNIDSLELSIIQVYAPTEASSDEELEFFYSTVDKAIQ 385
VK++L R ++ G+S+R ++L + L ++ +PT ASS EL S+ K
Sbjct: 120 VKRFLVRKNGAWRGISKRFSVL---YNGKWLKNMEATSPTSASSSRELSSSTSSTYKFCC 176
Query: 386 LSENNII 406
LS +I+
Sbjct: 177 LSREDIL 183
>03_01_0376 +
2931338-2931414,2931609-2931755,2933105-2933173,
2933256-2933427,2933505-2933733,2933826-2934343
Length = 403
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/49 (36%), Positives = 22/49 (44%)
Frame = -2
Query: 519 AKSMSLFPLQFLSPYPWLPVTVSLGLVCPILALKSPMTMILFSESCMAL 373
AK + PL+F P L ++S G VC PMT L C AL
Sbjct: 265 AKDVLTAPLRFRPPLSLLLASISKGNVCVAGDALHPMTPDLGQGGCAAL 313
>06_03_0731 - 23958101-23958458,23958525-23958535,23958641-23958667
Length = 131
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 209 KKYLKRYITSFIGLSERVALLRMNIDSLELSIIQVYAPTEASSDEELEFFYSTVD 373
K+ +R S +GL R+ R+ +E S I+ +AP+ A S + F+ V+
Sbjct: 28 KRGCRRNANSSLGLLPRIGYGRLTDWGIEASEIKRFAPSAAQSTNQRFTFWPNVE 82
>01_05_0675 + 24191930-24191983,24192080-24192168,24192277-24192376
Length = 80
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 408 SWVTLTPK*DKPIPTKQSLVTTDMEIETVEETGSSILHMRTIL 536
SW LTP P+PT LVT +++ T+ + S+I+ ++T+L
Sbjct: 6 SWGRLTPP--PPLPT---LVTFNIDTNTLTDRHSNIVWIKTVL 43
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,271,536
Number of Sequences: 37544
Number of extensions: 357709
Number of successful extensions: 796
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 796
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -