Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4099
         (742 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    39   0.006
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    39   0.006
M17214-2|AAA28508.1|  858|Drosophila melanogaster protein ( D.me...    33   0.31 
AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulf...    29   5.0  
AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA...    29   5.0  

>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
 Frame = +2

Query: 2   TLYIATYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTP 181
           +L I+ +N   +S +++  ELT+ +   N D++ LSET  L N    H    L+Y  + P
Sbjct: 3   SLRISLWNANGVSRHTQ--ELTQFIYEKNIDVMLLSETH-LTNKNNFHIPGYLFYGTNHP 59

Query: 182 ---GLYGVGFIVKKYLK-RYITSFIGLSERVALLRMNIDSLELSIIQVYAPTE--ASSDE 343
                 G G +++  +K  ++ +F     +   + + +++   ++  VY P     S D+
Sbjct: 60  DGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQ 119

Query: 344 ELEFFYSTVDKAIQLSENNIIVMGDFNAK 430
            +EFF +  D+         I  GD+NAK
Sbjct: 120 FMEFFNTLGDR--------FIAAGDYNAK 140


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 39.1 bits (87), Expect = 0.006
 Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 6/149 (4%)
 Frame = +2

Query: 2   TLYIATYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTP 181
           +L I+ +N   +S +++  ELT+ +   N D++ LSET  L N    H    L+Y  + P
Sbjct: 3   SLRISLWNANGVSRHTQ--ELTQFIYEKNIDVMLLSETH-LTNKNNFHIPGYLFYGTNHP 59

Query: 182 ---GLYGVGFIVKKYLK-RYITSFIGLSERVALLRMNIDSLELSIIQVYAPTE--ASSDE 343
                 G G +++  +K  ++ +F     +   + + +++   ++  VY P     S D+
Sbjct: 60  DGKAHGGTGILIRNRIKHHHLNNFDKNYLQSTSIALQLNNGSTTLAAVYCPPRFPISEDQ 119

Query: 344 ELEFFYSTVDKAIQLSENNIIVMGDFNAK 430
            +EFF +  D+         I  GD+NAK
Sbjct: 120 FMEFFNTLGDR--------FIAAGDYNAK 140


>M17214-2|AAA28508.1|  858|Drosophila melanogaster protein (
           D.melanogaster Fw repetitiveelement putative reverse
           transcriptase, complete cds,and putative binding
           protein, 3' end. ).
          Length = 858

 Score = 33.5 bits (73), Expect = 0.31
 Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 7/150 (4%)
 Frame = +2

Query: 2   TLYIATYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTP 181
           TL IAT+N   +S   R LEL + L   + D++ LSET        +  ++  Y T    
Sbjct: 3   TLRIATWNANGVS--QRKLELAQFLHEKHIDVMLLSETHLTSKYNFQIRDYHFYGTNHPD 60

Query: 182 GLY--GVGFIVKKYLKRYITSFIGLSERVALLRMNI---DSLELSIIQVYAPTEASSDEE 346
           G    G   +++  +K +          +    +NI   D+  L++  VY P   +  E 
Sbjct: 61  GKAHGGTAILIRNRMKHHFYKEFA-ENHLQATSINIQLDDNTLLTLAAVYCPPRFTVLEA 119

Query: 347 --LEFFYSTVDKAIQLSENNIIVMGDFNAK 430
             L+FF        Q    + I  GD+NAK
Sbjct: 120 QFLDFF--------QALGPHFIAAGDYNAK 141


>AF175689-1|AAD51842.1| 1048|Drosophila melanogaster heparan sulfate
            N-deacetylase/N-sulfotransferase homolog protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 166  HRRYARIIRSGFYCQKISEKIYYKLHRSFRKSSAAKDE 279
            H RY   ++ GFYCQ +SEK    L +S  +   A DE
Sbjct: 972  HLRYD--VKKGFYCQAVSEKRNKCLGKSKGRQYPAMDE 1007


>AE014296-1120|AAF50658.1| 1048|Drosophila melanogaster CG8339-PA
            protein.
          Length = 1048

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 166  HRRYARIIRSGFYCQKISEKIYYKLHRSFRKSSAAKDE 279
            H RY   ++ GFYCQ +SEK    L +S  +   A DE
Sbjct: 972  HLRYD--VKKGFYCQAVSEKRNKCLGKSKGRQYPAMDE 1007


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,581,085
Number of Sequences: 53049
Number of extensions: 645192
Number of successful extensions: 1891
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1891
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3355404063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)