Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4099
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 138 4e-33
AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical ... 107 1e-23
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 101 7e-22
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 62 4e-10
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z82268-3|CAB05198.2| 225|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL132904-11|CAC35844.1| 380|Caenorhabditis elegans Hypothetical... 28 6.0
AF049709-1|AAC36062.1| 380|Caenorhabditis elegans tyrosylprotei... 28 6.0
AF039042-7|AAC48250.1| 336|Caenorhabditis elegans Seven tm rece... 28 6.0
Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr... 28 8.0
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ... 28 8.0
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 138 bits (334), Expect = 4e-33
Identities = 88/242 (36%), Positives = 128/242 (52%), Gaps = 6/242 (2%)
Frame = +2
Query: 11 IATYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTG---DTP 181
+ T+N R++S+ RL EL E + I FD+IGL ET++ H + + G ++
Sbjct: 117 VCTFNCRSLSSDDRLAELLEETRRIQFDVIGLCETKRAAEAHLIHHDGTGVFLGKRNESS 176
Query: 182 GLYGVGFIVKKYLKRYITSFIGLSERVALLRMNID-SLELSIIQVYAPTEASSDEELEFF 358
GVGFIV+ L I LS R+ LL + ++IQVYAPT S EE+ F
Sbjct: 177 VSGGVGFIVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADSDLEEICDF 236
Query: 359 YSTVDKAIQLSENNI-IVMGDFNAKIGQTNPNETVTGNHGYGDRNCRGNRLIDFAHENNF 535
Y +V+ + + +V+GDFNA++G NE G H RN G L F N
Sbjct: 237 YDSVEDVFRECRSKYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLATFCETNRL 296
Query: 536 AIMNTFFKKTNKQRWTWRSPNGKIKNEIDYILTNLHRNIYDIQVL-NITYPSDHRPVRAS 712
N+ FKK +RWT+ SP+G ++EID+IL N + + D VL + T SDHR +R +
Sbjct: 297 WHTNSMFKKPMHKRWTFVSPDGNHRHEIDHILAN-GKFVTDTTVLPSFTNGSDHRLLRCN 355
Query: 713 LN 718
L+
Sbjct: 356 LH 357
>AF016663-5|AAC70880.1| 864|Caenorhabditis elegans Hypothetical
protein F21E9.5 protein.
Length = 864
Score = 107 bits (256), Expect = 1e-23
Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 4/180 (2%)
Frame = +2
Query: 191 GVGFIVKKYLKRYITSFIGLSERVALLRMNID-SLELSIIQVYAPTEASSDEELEFFYST 367
GVGFIVK L IT + + R+ L+ ++ + ++IQVYAPT S+ +E+ FY
Sbjct: 24 GVGFIVKSTLLPRITEVVFIDYRIGLITFKVNRKWKCTVIQVYAPTAVSTLDEISDFYEK 83
Query: 368 VDKAIQLSENNI-IVMGDFNAKIG-QTNPNETVTGNHGYGDRNCRGNRLIDFAHENNFAI 541
++ + +++GDFNA++G + + E G H RN G L F N
Sbjct: 84 LEDTYHACRSKYKLIIGDFNARVGNRKDETERYIGTHAMEPRNDTGEILATFCESNRLWH 143
Query: 542 MNTFFKKTNKQRWTWRSPNGKIKNEIDYILTNLHRNIYDIQVL-NITYPSDHRPVRASLN 718
+N+ F K +RWT SP+G K+EID+IL N + + D VL + T SDHR +R++++
Sbjct: 144 INSQFYKPINRRWTHVSPDGMFKHEIDHILAN-GKFVTDTSVLPSFTNGSDHRLLRSNIH 202
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 101 bits (241), Expect = 7e-22
Identities = 63/176 (35%), Positives = 92/176 (52%), Gaps = 3/176 (1%)
Frame = +2
Query: 200 FIVKKYLKRYITSFIGLSERVALLRMNID-SLELSIIQVYAPTEASSDEELEFFYSTVDK 376
++V+ L I LS R+ LL + ++IQVYAPT EE+ FY +V+
Sbjct: 12 YVVRSTLLPKIVEVRFLSHRIGLLTFKVSRKFNCTVIQVYAPTADLDLEEICDFYDSVED 71
Query: 377 AIQLSENNI-IVMGDFNAKIGQTNPNETVTGNHGYGDRNCRGNRLIDFAHENNFAIMNTF 553
+ + +V+GDFNA++G NE G H RN G L F N N+
Sbjct: 72 VFRECRSKYKLVIGDFNARMGCRQNNERYIGPHAMEPRNDTGELLTTFCETNRLWHTNSM 131
Query: 554 FKKTNKQRWTWRSPNGKIKNEIDYILTNLHRNIYDIQVL-NITYPSDHRPVRASLN 718
FKK +RWT+ SP+G ++EID+IL N + + D VL + T SDHR +R +L+
Sbjct: 132 FKKPMHKRWTFVSPDGNHRHEIDHILAN-GKFVTDTTVLPSFTNGSDHRLLRCNLH 186
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 62.1 bits (144), Expect = 4e-10
Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Frame = +2
Query: 431 IGQTNPNETVTGNHGYGDRNCRGNRLIDFAHENNFAIMNTFFKKTNKQRWTWRSPNGKIK 610
+G NE G H RN G L F N N+ FKK +RWT+ SP+G +
Sbjct: 1 MGCRQNNERYIGPHAMEPRNDTGELLATFCETNRLWHTNSMFKKPMHKRWTFVSPDGNHR 60
Query: 611 NEIDYILTNLHRNIYDIQVL-NITYPSDHRPVRASLN 718
+EID+IL N + + D VL + T SDHR +R +L+
Sbjct: 61 HEIDHILAN-GKFVTDTTVLPSFTNGSDHRLLRCNLH 96
>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
protein F54D1.5 protein.
Length = 1406
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 11 IATYNVRTMSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTPGLY 190
I T + R L +++ +D+ LS +G + H F+L G T G +
Sbjct: 265 IVTIGIAPWGVIKRKERLIRQNEHVYYDVHSLSVNANVGILNDRHSYFLLADNG-TVGRF 323
Query: 191 GVGFIVKKYLKRYITSF 241
G +++ L+ +I +F
Sbjct: 324 GADLHLRQNLENHIATF 340
>Z82268-3|CAB05198.2| 225|Caenorhabditis elegans Hypothetical
protein F52B11.2 protein.
Length = 225
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 62 LTECLKNINFDIIGLSETRKLGNTIEEHDEFILY----YTGDTPGLYG 193
L E K + I+G S+ +K+ + +HD+ +L YT GLYG
Sbjct: 5 LIEARKRVPLAIVGGSDFKKITEQLADHDKDLLLSLFDYTFSENGLYG 52
>AL132904-11|CAC35844.1| 380|Caenorhabditis elegans Hypothetical
protein Y111B2A.15 protein.
Length = 380
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 199 FYCQKISEKIYYKLHRSFRKSSAAKDEYR*LRIKHNSSLRSNRGLERRRIGIFLQYC*QS 378
F + ++ YY HR +AA D L +S+RS+ G R IF+ +S
Sbjct: 21 FITARTADDPYYSNHREKFNGAAADDGDESLPFHQLTSVRSDDGYNRTSPFIFIGGVPRS 80
Query: 379 HTTLRK 396
TTL +
Sbjct: 81 GTTLMR 86
>AF049709-1|AAC36062.1| 380|Caenorhabditis elegans tyrosylprotein
sulfotransferase-A protein.
Length = 380
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +1
Query: 199 FYCQKISEKIYYKLHRSFRKSSAAKDEYR*LRIKHNSSLRSNRGLERRRIGIFLQYC*QS 378
F + ++ YY HR +AA D L +S+RS+ G R IF+ +S
Sbjct: 21 FITARTADDPYYSNHREKFNGAAADDGDESLPFHQLTSVRSDDGYNRTSPFIFIGGVPRS 80
Query: 379 HTTLRK 396
TTL +
Sbjct: 81 GTTLMR 86
>AF039042-7|AAC48250.1| 336|Caenorhabditis elegans Seven tm
receptor protein 160 protein.
Length = 336
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 578 WTWRSPNGKIKNEIDYILTNLHRNI 652
W W+ NG + +DY+L L NI
Sbjct: 186 WYWKMENGNVNLSVDYLLKFLIMNI 210
>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -2
Query: 678 VIFKT*ISYMFLCKFVKM*SISFFIFPLGDLQVHLCLFVFLKKVFIIAKLFSCAKSMSL 502
V+F++ S + + F++M S + P GDL + C+ FL ++F+ K SC +S+
Sbjct: 434 VVFRSSSSTVLI--FIQMCSEMNQLDPQGDLYLEKCIKGFLTELFLKWKEQSCTHYVSI 490
>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
protein T08A11.1 protein.
Length = 1872
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = -2
Query: 678 VIFKT*ISYMFLCKFVKM*SISFFIFPLGDLQVHLCLFVFLKKVFIIAKLFSCAKSMSL 502
V+F++ S + + F++M S + P GDL + C+ FL ++F+ K SC +S+
Sbjct: 434 VVFRSSSSTVLI--FIQMCSEMNQLDPQGDLYLEKCIKGFLTELFLKWKEQSCTHYVSI 490
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,972,400
Number of Sequences: 27780
Number of extensions: 362577
Number of successful extensions: 1036
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -