Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4099
         (742 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    26   0.43 
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.56 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.3  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 220 EKIYYKLHRSFRKSSAAKDEYR*LRIKHNSSLRSN 324
           EK+    HR FR S  A D+ +  RIK    L ++
Sbjct: 652 EKLMMLKHREFRSSIKASDKLKDSRIKTTEKLSTD 686


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.56
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 35  MSTYSRLLELTECLKNINFDIIGLSETRKLGNTIEEHDEFILYYTGDTPGLYGVGFIVKK 214
           MS +  LL        I    IG+S        +E+H+   ++  G  PG   +  I+KK
Sbjct: 416 MSIHDELLGADLVEHRIRHSQIGISRAMSALRILEKHELANVHPVGINPGKMQLKNIIKK 475

Query: 215 YLK 223
            L+
Sbjct: 476 LLQ 478


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -3

Query: 671 LKPEYHICFCVSLLKCSLFHFLFSRWVISKSI 576
           L   Y +C+ + +    LF  ++S W I +++
Sbjct: 212 LSASYLVCYGIWVYFVPLFLIIYSYWFIIQAV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -3

Query: 671 LKPEYHICFCVSLLKCSLFHFLFSRWVISKSI 576
           L   Y +C+ + +    LF  ++S W I +++
Sbjct: 88  LSASYLVCYGIWVYFVPLFLIIYSYWFIIQAV 119


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 155 ILYYTGDTPGLYGVG 199
           I+ YTGD  G+ G G
Sbjct: 104 IIAYTGDVHGVIGAG 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,341
Number of Sequences: 438
Number of extensions: 4800
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)