Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4098
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    28   1.3  
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa...    28   1.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.1  
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces...    26   6.7  
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M...    25   8.9  

>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 516 IMFGSLSQ*KT-FPHYAQSIKVQSLIQSIDFYCLTSEVLPRISAFMI*PSPN 364
           IMF  L++ +T FPH  + ++ + +I  I+FY +   V      +   P  N
Sbjct: 373 IMFDRLNKLQTKFPHVMKDVRGRGMIVGIEFYPIPESVQEEFGEYYATPIVN 424


>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 18/51 (35%), Positives = 24/51 (47%)
 Frame = +3

Query: 552 VLPISATNNTAFFVPTYSLVA*EAIPATPGQVGELTS*RNLCKVCFHPVMK 704
           +LPI    +  F  P  S+VA ++   T GQV    S   LC    H V+K
Sbjct: 250 LLPILNHLSKGFVAPESSIVAPKSGAITAGQVDSFVSHFPLCAKHLHEVLK 300


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 92  TCILGSRHQLHQSGAS--IVISFLWVTIA 12
           T +LGS H L +S  S  I++  +W+ +A
Sbjct: 575 TALLGSNHDLSKSSFSGLIIVCLIWILVA 603


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = +1

Query: 268 EIKFKGMTGKNSTNRDSIMESGKLYFL-SQTHHVWAW 375
           E+KFKG     S NR    + G      S+ H V+ W
Sbjct: 483 ELKFKGHANAQSQNRAYFDDDGNYVICGSEDHQVFIW 519


>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = -1

Query: 526 TRPYNVWQLKSI---KNIPALCSEYQSSKFNPKY 434
           T+PY +W LK +       +L +E   S F P+Y
Sbjct: 189 TKPYTLWNLKGLAKDAGYTSLMTEKFDSSFYPEY 222


>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 453

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 569 YEQYCFFCPYLF 604
           +++YC  CPYLF
Sbjct: 437 FDEYCRICPYLF 448


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,169,278
Number of Sequences: 5004
Number of extensions: 65380
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)