Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4098
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0403 - 29060712-29060732,29061260-29061334,29061596-290617...    30   2.3  
01_07_0313 + 42681902-42681950,42682800-42682935,42683399-426835...    29   5.3  
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139...    28   7.0  

>01_06_0403 -
           29060712-29060732,29061260-29061334,29061596-29061762,
           29061841-29061996,29062412-29062535,29062949-29063047,
           29063155-29063254,29063331-29063380,29063461-29063562,
           29063709-29063786,29063865-29064131,29064225-29064321,
           29064446-29064746,29066714-29066805,29066890-29067005,
           29067445-29067519,29067846-29067911,29068206-29068262,
           29068381-29068430,29068518-29068688,29068969-29069060,
           29069124-29069281
          Length = 837

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 102 IILDQRSFEPERVATRMYLQIR-NRQIGYTSHMFIIIPTLSPALVSSGRYDGKELSR 269
           I LD +  +   +A R  + I+ NR+I Y + + ++ PT S + VSS ++    L R
Sbjct: 206 ISLDLKPSDAINIAFRCKVPIQVNRRIAYNNGLKVVQPTPSESYVSSDQFQYTRLDR 262


>01_07_0313 +
           42681902-42681950,42682800-42682935,42683399-42683501,
           42683514-42683621,42684274-42684513,42684819-42684951,
           42685038-42685219,42685506-42685618,42687450-42687555
          Length = 389

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 229 RAGERVGIIMNICDV*PICL 170
           ++GE +GI +N+CD  P CL
Sbjct: 141 KSGEIIGIELNVCDTQPSCL 160


>06_01_0179 -
           1388602-1389572,1390060-1390129,1390346-1390439,
           1390587-1390687,1391152-1391220,1391328-1391482,
           1392193-1392241,1392611-1392739,1392825-1393580,
           1394711-1394902
          Length = 861

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 519 GRVVGPYPLITVLPISATNNTAFFVPTYS 605
           G V G  P++T  P S  NNTA  +P+ S
Sbjct: 763 GAVKGGTPMVTTGPSSVINNTASILPSRS 791


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,488,839
Number of Sequences: 37544
Number of extensions: 388403
Number of successful extensions: 694
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)