Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4098
         (760 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AC006774-4|AAF60617.2|  313|Caenorhabditis elegans Serpentine re...    28   8.3  

>U88174-6|AAB42272.1|  680|Caenorhabditis elegans Hypothetical
           protein M01A10.1 protein.
          Length = 680

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 477 AGMFFIDLSCQTL*GRVVGPYPLITVLPISAT 572
           +GMFF D+S  T+  R+V PY L  V  +  T
Sbjct: 39  SGMFFQDVSSLTMNSRMVVPYDLANVNKVKWT 70


>AC006774-4|AAF60617.2|  313|Caenorhabditis elegans Serpentine
           receptor, class t protein42, isoform a protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 134 FRFKRPLVQYNETYTCILGSRHQLHQSGASI 42
           FRFK+P+     T   ++G  HQ H   +S+
Sbjct: 282 FRFKKPINTRTTTTVSVVGHGHQHHHHSSSL 312


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,194,599
Number of Sequences: 27780
Number of extensions: 354513
Number of successful extensions: 721
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)