Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4098
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   3.1  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   3.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.2  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 296 KTVQTVIPSWNLVNCTSYPKHITFGL 373
           + V+ +I  W L  C + P+ I FG+
Sbjct: 170 RAVKFIIVIWLLALCLAVPQAIQFGV 195


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 32  TKLRLTRLIDAIDALSLRCRYKSHYIGP 115
           TK  +   I  IDA   R  Y+ HY+ P
Sbjct: 93  TKTLVKNAIVTIDATPFRQWYEGHYVLP 120


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 562 IGKTVINGYGPTTRPYNVWQLKSIKNIPALCSEYQ 458
           I   + NG GP   PY  W     +N   + S Y+
Sbjct: 94  ISNKIGNG-GPLLEPYPNWSWAKNQNCSGITSVYR 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,999
Number of Sequences: 438
Number of extensions: 4540
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)