Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4096
         (813 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   3.2  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    27   3.2  
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   4.2  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
 Frame = -2

Query: 599 RSCMSVTGYRGSVCLGHQRSGMGI-GCVRGGVSNRGCMCGISCEWCSM---RSVSCNRCG 432
           R C +  G +     G  RS M    C   G   R C  G+ C  C     RS  C +  
Sbjct: 96  RDCRT-NGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRSFECQQAS 154

Query: 431 SGVSRYRSDSFG 396
            G   Y+ +  G
Sbjct: 155 DGQLCYKCNQPG 166


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 253 QPTLRLPSTRATPRLPSPSQHPSLRPLRPQYLPFHPTL 366
           +P L L  TR+  R PSP +  S   LRPQ  P  P++
Sbjct: 209 EPYLPLSPTRSPARTPSPIRLYSSDALRPQ-SPLSPSV 245


>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 289 PRLPSPSQHPSLRPLRPQYLPFHPTL 366
           P    PSQHP +  +  QYLP+   L
Sbjct: 427 PTSSPPSQHPPVGQIPSQYLPYQAGL 452


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,912,997
Number of Sequences: 5004
Number of extensions: 26883
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)